ingres-package

_PACKAGE

Given a gene regulatory boolean network and a RNA-seq dataset, this package computes protein activity normalised enrichment scores using 'VIPER', and then produces a probabilistic network using the scores as probabilities for fixed node activation or deactivation, in addition to the original Boolean functions. For more information, refer to the preprint: Victori and Buffa (2022) &lt;doi:10.1101/2022.09.04.506528&gt;.

internal

Given a gene regulatory boolean network and a RNA-seq dataset,
this package computes protein activity normalised enrichment scores
using 'VIPER', and then produces a probabilistic network using the scores
as probabilities for fixed node activation or deactivation,
in addition to the original Boolean functions.
For more information, refer to the preprint:
Victori and Buffa (2022) <doi:10.1101/2022.09.04.506528>.

Pedro Victori

ingres

Infer Gene Probabilistic Boolean Networks from Single-Cell Data

Francesca M. Buffa

ingres-package function

Maintainer: Pedro Victori <a href="/link/pedroluisvictori%40gmail.com?package=ingres&version=1.0.0" data-mini-rdoc="ingres::pedroluisvictori@gmail.com">pedroluisvictori@gmail.com</a> (<a href="https://orcid.org/0000-0001-6321-5584">ORCID</a>)
Authors:<ul>
<li>Francesca M. Buffa <a href="/link/francesca.buffa%40unibocconi.it?package=ingres&version=1.0.0" data-mini-rdoc="ingres::francesca.buffa@unibocconi.it">francesca.buffa@unibocconi.it</a> (<a href="https://orcid.org/0000-0003-0409-406X">ORCID</a>)</li>
</ul>

Author

ingres: Infer Gene Probabilistic Boolean Networks from Single-Cell Data — ingres-package

Maintainer: Pedro Victori <a href='mailto:pedroluisvictori@gmail.com'>pedroluisvictori@gmail.com</a> (<a href='https://orcid.org/0000-0001-6321-5584'>ORCID</a>)
Authors:<ul>
<li>Francesca M. Buffa <a href='mailto:francesca.buffa@unibocconi.it'>francesca.buffa@unibocconi.it</a> (<a href='https://orcid.org/0000-0003-0409-406X'>ORCID</a>)</li>
</ul>

ingres-package: ingres: Infer Gene Probabilistic Boolean Networks from Single-Cell Data

Description

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Author

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