network

<p>An example network,
in the format required by the package.
The network is a modified version of the one in
Remy et al. Cancer Res 75, 4042–4052 (2015)</p>

datasets

Given a gene regulatory boolean network and a RNA-seq dataset,
this package computes protein activity normalised enrichment scores
using 'VIPER', and then produces a probabilistic network using the scores
as probabilities for fixed node activation or deactivation,
in addition to the original Boolean functions.
For more information, refer to the preprint:
Victori and Buffa (2022) <doi:10.1101/2022.09.04.506528>.

Pedro Victori

ingres

Infer Gene Probabilistic Boolean Networks from Single-Cell Data

Francesca M. Buffa

network function

<p>An object of class <code>tbl_graph</code> (inherits from <code>igraph</code>) of length 30.</p>

Format

An example network,
in the format required by the package.
The network is a modified version of the one in
Remy et al. Cancer Res 75, 4042–4052 (2015) — network

network: An example network, in the format required by the package. The network is a modified version of the one in Remy et al. Cancer Res 75, 4042–4052 (2015)

Description

Usage

Arguments

Format