doIntegration calculate log2FoldChange of RNA-Seq and ChIP-Seq and then calculate Z scores for each marker.
doIntegration
doIntegration(res, ref, type = "apeglm", apeAdapt = FALSE)
a list result from doMatch function.
doMatch
specifying the reference level
shrinkage estimator, default is "apeglm", the adaptive t prior shrinkage estimator from the 'apeglm' package.
logical, should apeglm use the MLE estimates of LFC to adapt the prior, or use default.
df_final a dataframe contains log2FoldChange of RNA-Seq and ChIP-Seq and Z scores for each marker.
# NOT RUN { data(res) # } # NOT RUN { doIntegration(res = res,ref="wild.type") # } # NOT RUN { # }
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