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intePareto

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Version

Install

install.packages('intePareto')

Monthly Downloads

27

Version

0.1.2

License

GPL (>= 2)

Maintainer

Yingying Cao

Last Published

June 18th, 2021

Functions in intePareto (0.1.2)

bam2rpm

Compute the normalized number of reads (rpm) fall into specific genomic region
test_rna_meta

meta data of preprocessed RNA-Seq data
promoter

an example of promoter region
doMatch

Match the RNA-Seq and ChIP-Seq data on the gene level
counts2lFC

Calculate log2FoldChange
doPareto

Prioritization of genes based on Z scores
bam2counts

Compute the number of reads fall into specific genomic region
doIntegration

Do integrative analysis
res

an example of the result of doMatch
df_final

an example of the result of doIntegration
test_chip_meta

meta data of preprocessed ChIP-Seq data