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intePareto
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Version
Version
0.1.2
0.1.1
0.0.1
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Install
install.packages('intePareto')
Monthly Downloads
29
Version
0.1.2
License
GPL (>= 2)
Maintainer
Yingying Cao
Last Published
June 18th, 2021
Functions in intePareto (0.1.2)
Search functions
bam2rpm
Compute the normalized number of reads (rpm) fall into specific genomic region
test_rna_meta
meta data of preprocessed RNA-Seq data
promoter
an example of promoter region
doMatch
Match the RNA-Seq and ChIP-Seq data on the gene level
counts2lFC
Calculate log2FoldChange
doPareto
Prioritization of genes based on Z scores
bam2counts
Compute the number of reads fall into specific genomic region
doIntegration
Do integrative analysis
res
an example of the result of doMatch
df_final
an example of the result of doIntegration
test_chip_meta
meta data of preprocessed ChIP-Seq data