Visualization of Interactive Circos Plot
Circos(
moduleList = CircosModuleList(),
genome = "hg19",
genome2 = "hg19",
genomeFillColor = "Spectral",
chrPad = 0.02,
width = NULL,
height = NULL,
innerRadius = 216,
outerRadius = 240,
svgClassName = "interacCircos",
displayGenomeBorder = TRUE,
genomeBorderColor = "#000",
genomeBorderSize = 0.5,
genomeTicksDisplay = FALSE,
genomeTicksLen = 5,
genomeTicksColor = "#000",
genomeTicksTextSize = "0.6em",
genomeTicksRealLength = TRUE,
genomeTicksTextColor = "#000",
genomeTicksScale = 3e+07,
genomeTicksOffset = 0,
genomeLabelDisplay = TRUE,
genomeLabelTextSize = "10pt",
genomeLabelTextColor = "#000",
genomeLabelDx = 0,
genomeLabelDy = 0,
compareEvent = FALSE,
compareEventGroupGapRate = 0.1,
compareEventGroupDistance = 0,
zoom = TRUE,
TEXTModuleDragEvent = FALSE,
CNVxlink = FALSE,
CNVMouseEvent = TRUE,
CNVMouseClickDisplay = FALSE,
CNVMouseClickColor = "red",
CNVMouseClickArcOpacity = 1,
CNVMouseClickArcStrokeColor = "#F26223",
CNVMouseClickArcStrokeWidth = 0,
CNVMouseClickTextFromData = "fourth",
CNVMouseClickTextOpacity = 1,
CNVMouseClickTextColor = "red",
CNVMouseClickTextSize = 8,
CNVMouseClickTextPostionX = 0,
CNVMouseClickTextPostionY = 0,
CNVMouseClickTextDrag = TRUE,
CNVMouseDownDisplay = FALSE,
CNVMouseDownColor = "green",
CNVMouseDownArcOpacity = 1,
CNVMouseDownArcStrokeColor = "#F26223",
CNVMouseDownArcStrokeWidth = 0,
CNVMouseEnterDisplay = FALSE,
CNVMouseEnterColor = "yellow",
CNVMouseEnterArcOpacity = 1,
CNVMouseEnterArcStrokeColor = "#F26223",
CNVMouseEnterArcStrokeWidth = 0,
CNVMouseLeaveDisplay = FALSE,
CNVMouseLeaveColor = "pink",
CNVMouseLeaveArcOpacity = 1,
CNVMouseLeaveArcStrokeColor = "#F26223",
CNVMouseLeaveArcStrokeWidth = 0,
CNVMouseMoveDisplay = FALSE,
CNVMouseMoveColor = "red",
CNVMouseMoveArcOpacity = 1,
CNVMouseMoveArcStrokeColor = "#F26223",
CNVMouseMoveArcStrokeWidth = 0,
CNVMouseOutDisplay = FALSE,
CNVMouseOutAnimationTime = 500,
CNVMouseOutColor = "red",
CNVMouseOutArcOpacity = 1,
CNVMouseOutArcStrokeColor = "red",
CNVMouseOutArcStrokeWidth = 0,
CNVMouseUpDisplay = FALSE,
CNVMouseUpColor = "grey",
CNVMouseUpArcOpacity = 1,
CNVMouseUpArcStrokeColor = "#F26223",
CNVMouseUpArcStrokeWidth = 0,
CNVMouseOverDisplay = FALSE,
CNVMouseOverColor = "red",
CNVMouseOverArcOpacity = 1,
CNVMouseOverArcStrokeColor = "#F26223",
CNVMouseOverArcStrokeWidth = 3,
CNVMouseOverTooltipsSetting = "style1",
CNVMouseOverTooltipsHtml = " ",
CNVMouseOverTooltipsPosition = "absolute",
CNVMouseOverTooltipsBackgroundColor = "white",
CNVMouseOverTooltipsBorderStyle = "solid",
CNVMouseOverTooltipsBorderWidth = 0,
CNVMouseOverTooltipsPadding = "3px",
CNVMouseOverTooltipsBorderRadius = "3px",
CNVMouseOverTooltipsOpacity = 0.8,
HEATMAPMouseEvent = TRUE,
HEATMAPMouseClickDisplay = FALSE,
HEATMAPMouseClickColor = "green",
HEATMAPMouseClickOpacity = 1,
HEATMAPMouseClickStrokeColor = "none",
HEATMAPMouseClickStrokeWidth = "none",
HEATMAPMouseDownDisplay = FALSE,
HEATMAPMouseDownColor = "green",
HEATMAPMouseDownOpacity = 1,
HEATMAPMouseDownStrokeColor = "none",
HEATMAPMouseDownStrokeWidth = "none",
HEATMAPMouseEnterDisplay = FALSE,
HEATMAPMouseEnterColor = "green",
HEATMAPMouseEnterOpacity = 1,
HEATMAPMouseEnterStrokeColor = "none",
HEATMAPMouseEnterStrokeWidth = "none",
HEATMAPMouseLeaveDisplay = FALSE,
HEATMAPMouseLeaveColor = "green",
HEATMAPMouseLeaveOpacity = 1,
HEATMAPMouseLeaveStrokeColor = "none",
HEATMAPMouseLeaveStrokeWidth = "none",
HEATMAPMouseMoveDisplay = FALSE,
HEATMAPMouseMoveColor = "green",
HEATMAPMouseMoveOpacity = 1,
HEATMAPMouseMoveStrokeColor = "none",
HEATMAPMouseMoveStrokeWidth = "none",
HEATMAPMouseOutDisplay = FALSE,
HEATMAPMouseOutAnimationTime = 500,
HEATMAPMouseOutColor = "green",
HEATMAPMouseOutOpacity = 1,
HEATMAPMouseOutStrokeColor = "none",
HEATMAPMouseOutStrokeWidth = "none",
HEATMAPMouseUpDisplay = FALSE,
HEATMAPMouseUpColor = "green",
HEATMAPMouseUpOpacity = 1,
HEATMAPMouseUpStrokeColor = "none",
HEATMAPMouseUpStrokeWidth = "none",
HEATMAPMouseOverDisplay = FALSE,
HEATMAPMouseOverColor = "none",
HEATMAPMouseOverOpacity = 1,
HEATMAPMouseOverStrokeColor = "none",
HEATMAPMouseOverStrokeWidth = "none",
HEATMAPMouseOverTooltipsSetting = "style1",
HEATMAPMouseOverTooltipsHtml = " ",
HEATMAPMouseOverTooltipsPosition = "absolute",
HEATMAPMouseOverTooltipsBackgroundColor = "white",
HEATMAPMouseOverTooltipsBorderStyle = "solid",
HEATMAPMouseOverTooltipsBorderWidth = 0,
HEATMAPMouseOverTooltipsPadding = "3px",
HEATMAPMouseOverTooltipsBorderRadius = "3px",
HEATMAPMouseOverTooltipsOpacity = 0.8,
BUBBLExlink = FALSE,
BUBBLEMouseEvent = TRUE,
BUBBLEMouseClickDisplay = FALSE,
BUBBLEMouseClickColor = "green",
BUBBLEMouseClickOpacity = 1,
BUBBLEMouseClickStrokeColor = "none",
BUBBLEMouseClickStrokeWidth = "none",
BUBBLEMouseDownDisplay = FALSE,
BUBBLEMouseDownColor = "green",
BUBBLEMouseDownOpacity = 1,
BUBBLEMouseDownStrokeColor = "none",
BUBBLEMouseDownStrokeWidth = "none",
BUBBLEMouseEnterDisplay = FALSE,
BUBBLEMouseEnterColor = "green",
BUBBLEMouseEnterOpacity = 1,
BUBBLEMouseEnterStrokeColor = "none",
BUBBLEMouseEnterStrokeWidth = "none",
BUBBLEMouseLeaveDisplay = FALSE,
BUBBLEMouseLeaveColor = "green",
BUBBLEMouseLeaveOpacity = 1,
BUBBLEMouseLeaveStrokeColor = "none",
BUBBLEMouseLeaveStrokeWidth = "none",
BUBBLEMouseMoveDisplay = FALSE,
BUBBLEMouseMoveColor = "green",
BUBBLEMouseMoveOpacity = 1,
BUBBLEMouseMoveStrokeColor = "none",
BUBBLEMouseMoveStrokeWidth = "none",
BUBBLEMouseOutDisplay = FALSE,
BUBBLEMouseOutAnimationTime = 500,
BUBBLEMouseOutColor = "green",
BUBBLEMouseOutOpacity = 1,
BUBBLEMouseOutStrokeColor = "none",
BUBBLEMouseOutStrokeWidth = "none",
BUBBLEMouseUpDisplay = FALSE,
BUBBLEMouseUpColor = "green",
BUBBLEMouseUpOpacity = 1,
BUBBLEMouseUpStrokeColor = "none",
BUBBLEMouseUpStrokeWidth = "none",
BUBBLEMouseOverDisplay = FALSE,
BUBBLEMouseOverColor = "green",
BUBBLEMouseOverOpacity = 1,
BUBBLEMouseOverStrokeColor = "none",
BUBBLEMouseOverStrokeWidth = "none",
BUBBLEMouseOverTooltipsSetting = "style1",
BUBBLEMouseOverTooltipsHtml = " ",
BUBBLEMouseOverTooltipsPosition = "absolute",
BUBBLEMouseOverTooltipsBackgroundColor = "white",
BUBBLEMouseOverTooltipsBorderStyle = "solid",
BUBBLEMouseOverTooltipsBorderWidth = 0,
BUBBLEMouseOverTooltipsPadding = "3px",
BUBBLEMouseOverTooltipsBorderRadius = "3px",
BUBBLEMouseOverTooltipsOpacity = 0.8,
SNPxlink = FALSE,
SNPMouseEvent = TRUE,
SNPMouseCombinationEvent = FALSE,
SNPMouseCombinationImageDisplay = FALSE,
SNPMouseCombinationImageTitle = "This is image",
SNPMouseCombinationImageTitleSize = 5,
SNPMouseCombinationImageTitleWeight = "bold",
SNPMouseCombinationImageTitleColor = "black",
SNPMouseCombinationImagePositionX = 0,
SNPMouseCombinationImagePositionY = 0,
SNPMouseCombinationImageHeight = 200,
SNPMouseCombinationImageWidth = 300,
SNPMouseCombinationGraphDisplay = FALSE,
SNPMouseCombinationGraphTitle = "This is graph",
SNPMouseCombinationGraphTitleSize = 5,
SNPMouseCombinationGraphTitleWeight = "bold",
SNPMouseCombinationGraphTitleColor = "black",
SNPMouseCombinationGraphType = "histogram",
SNPMouseCombinationGraphPositionX = 0,
SNPMouseCombinationGraphPositionY = 0,
SNPMouseCombinationGraphHeight = 200,
SNPMouseCombinationGraphWidth = 300,
SNPMouseCombinationGraphHistogramBarColor = "blue",
SNPMouseCombinationGraphHistogramPadding = 30,
SNPMouseCombinationGraphHistogramPositionCorrectX = 0,
SNPMouseCombinationGraphPieAutoColor = TRUE,
SNPMouseCombinationGraphPieColor = c("blue", "orange"),
SNPMouseCombinationGraphPieSize = 50,
SNPMouseCombinationGraphPieStroke = TRUE,
SNPMouseCombinationGraphPieStrokeColor = "black",
SNPMouseCombinationGraphPieStrokeWidth = 1,
SNPMouseCombinationGraphPieOpacity = 1,
SNPMouseCombinationGraphLineType = "linear",
SNPMouseCombinationGraphLineColor = "black",
SNPMouseCombinationGraphLineWidth = 1,
SNPMouseCombinationGraphLinePoint = FALSE,
SNPMouseCombinationGraphLinePointSize = 5,
SNPMouseCombinationGraphLinePointAutoColor = TRUE,
SNPMouseCombinationGraphLinePointColor = c("blue", "orange"),
SNPMouseCombinationGraphLinePointStroke = TRUE,
SNPMouseCombinationGraphLinePointStrokeColor = "black",
SNPMouseCombinationGraphLinePointStrokeWidth = 1,
SNPMouseCombinationGraphLinePointOpacity = 1,
SNPMouseCombinationGraphLinePositionCorrectX = 0,
SNPMouseCombinationTextDisplay = FALSE,
SNPMouseCombinationTextColor = "red",
SNPMouseCombinationTextSize = 3,
SNPMouseCombinationTextWeight = "bold",
SNPMouseCombinationTextPositionCorrectX = 0,
SNPMouseCombinationTextPositionCorrectY = 0,
SNPMouseClickDisplay = FALSE,
SNPMouseClickColor = "red",
SNPMouseClickCircleSize = 4,
SNPMouseClickCircleOpacity = 1,
SNPMouseClickCircleStrokeColor = "#F26223",
SNPMouseClickCircleStrokeWidth = 0,
SNPMouseClickTextFromData = "fourth",
SNPMouseClickTextOpacity = 1,
SNPMouseClickTextColor = "red",
SNPMouseClickTextSize = 8,
SNPMouseClickTextPostionX = 1,
SNPMouseClickTextPostionY = 10,
SNPMouseClickTextDrag = TRUE,
SNPMouseDownDisplay = FALSE,
SNPMouseDownColor = "green",
SNPMouseDownCircleSize = 4,
SNPMouseDownCircleOpacity = 1,
SNPMouseDownCircleStrokeColor = "#F26223",
SNPMouseDownCircleStrokeWidth = 0,
SNPMouseEnterDisplay = FALSE,
SNPMouseEnterColor = "yellow",
SNPMouseEnterCircleSize = 4,
SNPMouseEnterCircleOpacity = 1,
SNPMouseEnterCircleStrokeColor = "#F26223",
SNPMouseEnterCircleStrokeWidth = 0,
SNPMouseLeaveDisplay = FALSE,
SNPMouseLeaveColor = "pink",
SNPMouseLeaveCircleSize = 4,
SNPMouseLeaveCircleOpacity = 1,
SNPMouseLeaveCircleStrokeColor = "#F26223",
SNPMouseLeaveCircleStrokeWidth = 0,
SNPMouseMoveDisplay = FALSE,
SNPMouseMoveColor = "red",
SNPMouseMoveCircleSize = 2,
SNPMouseMoveCircleOpacity = 1,
SNPMouseMoveCircleStrokeColor = "#F26223",
SNPMouseMoveCircleStrokeWidth = 0,
SNPMouseOutDisplay = FALSE,
SNPMouseOutAnimationTime = 500,
SNPMouseOutColor = "red",
SNPMouseOutCircleSize = 2,
SNPMouseOutCircleOpacity = 1,
SNPMouseOutCircleStrokeColor = "red",
SNPMouseOutCircleStrokeWidth = 0,
SNPMouseUpDisplay = FALSE,
SNPMouseUpColor = "grey",
SNPMouseUpCircleSize = 2,
SNPMouseUpCircleOpacity = 1,
SNPMouseUpCircleStrokeColor = "#F26223",
SNPMouseUpCircleStrokeWidth = 0,
SNPMouseOverDisplay = FALSE,
SNPMouseOverColor = "red",
SNPMouseOverCircleSize = 2,
SNPMouseOverCircleOpacity = 1,
SNPMouseOverCircleStrokeColor = "#F26223",
SNPMouseOverCircleStrokeWidth = 3,
SNPMouseOverTooltipsSetting = "style1",
SNPMouseOverTooltipsHtml = " ",
SNPMouseOverTooltipsPosition = "absolute",
SNPMouseOverTooltipsBackgroundColor = "white",
SNPMouseOverTooltipsBorderStyle = "solid",
SNPMouseOverTooltipsBorderWidth = 0,
SNPMouseOverTooltipsPadding = "3px",
SNPMouseOverTooltipsBorderRadius = "3px",
SNPMouseOverTooltipsOpacity = 0.8,
LINKxlink = FALSE,
LINKMouseEvent = TRUE,
LINKMouseClickDisplay = FALSE,
LINKMouseClickOpacity = 1,
LINKMouseClickStrokeColor = "green",
LINKMouseClickStrokeWidth = 4,
LINKMouseDownDisplay = FALSE,
LINKMouseDownOpacity = 1,
LINKMouseDownStrokeColor = "none",
LINKMouseDownStrokeWidth = "none",
LINKMouseEnterDisplay = FALSE,
LINKMouseEnterOpacity = 1,
LINKMouseEnterStrokeColor = "none",
LINKMouseEnterStrokeWidth = "none",
LINKMouseLeaveDisplay = FALSE,
LINKMouseLeaveOpacity = 1,
LINKMouseLeaveStrokeColor = "none",
LINKMouseLeaveStrokeWidth = "none",
LINKMouseMoveDisplay = FALSE,
LINKMouseMoveOpacity = 1,
LINKMouseMoveStrokeColor = "none",
LINKMouseMoveStrokeWidth = "none",
LINKMouseOutDisplay = FALSE,
LINKMouseOutAnimationTime = 500,
LINKMouseOutOpacity = 1,
LINKMouseOutStrokeColor = "none",
LINKMouseOutStrokeWidth = "none",
LINKMouseUpDisplay = FALSE,
LINKMouseUpOpacity = 1,
LINKMouseUpStrokeColor = "none",
LINKMouseUpStrokeWidth = "none",
LINKMouseOverDisplay = FALSE,
LINKMouseOverOpacity = 1,
LINKMouseOverStrokeColor = "none",
LINKMouseOverStrokeWidth = "none",
LINKMouseOverTooltipsSetting = "style1",
LINKMouseOverTooltipsHtml = " ",
LINKMouseOverTooltipsPosition = "absolute",
LINKMouseOverTooltipsBackgroundColor = "white",
LINKMouseOverTooltipsBorderStyle = "solid",
LINKMouseOverTooltipsBorderWidth = 0,
LINKMouseOverTooltipsPadding = "3px",
LINKMouseOverTooltipsBorderRadius = "3px",
LINKMouseOverTooltipsOpacity = 1,
LINKLabelDragEvent = FALSE,
CHORDMouseEvent = TRUE,
CHORDMouseFillColorExcluded = "#FFFFFF",
CHORDMouseClickDisplay = FALSE,
CHORDMouseClickOpacity = 1,
CHORDMouseClickStrokeColor = "none",
CHORDMouseClickStrokeWidth = "none",
CHORDMouseDownDisplay = FALSE,
CHORDMouseDownOpacity = 1,
CHORDMouseDownStrokeColor = "none",
CHORDMouseDownStrokeWidth = "none",
CHORDMouseEnterDisplay = FALSE,
CHORDMouseEnterOpacity = 1,
CHORDMouseEnterStrokeColor = "none",
CHORDMouseEnterStrokeWidth = "none",
CHORDMouseLeaveDisplay = FALSE,
CHORDMouseLeaveOpacity = 1,
CHORDMouseLeaveStrokeColor = "none",
CHORDMouseLeaveStrokeWidth = "none",
CHORDMouseMoveDisplay = FALSE,
CHORDMouseMoveOpacity = 1,
CHORDMouseMoveStrokeColor = "none",
CHORDMouseMoveStrokeWidth = "none",
CHORDMouseOutDisplay = FALSE,
CHORDMouseOutAnimationTime = 500,
CHORDMouseOutOpacity = 1,
CHORDMouseOutStrokeColor = "none",
CHORDMouseOutStrokeWidth = "none",
CHORDMouseUpDisplay = FALSE,
CHORDMouseUpOpacity = 1,
CHORDMouseUpStrokeColor = "none",
CHORDMouseUpStrokeWidth = "none",
CHORDMouseOverDisplay = FALSE,
CHORDMouseOverOpacity = 1,
CHORDMouseOverStrokeColor = "none",
CHORDMouseOverStrokeWidth = "none",
HISTOGRAMxlink = FALSE,
HISTOGRAMMouseEvent = TRUE,
HISTOGRAMMouseClickDisplay = FALSE,
HISTOGRAMMouseClickColor = "red",
HISTOGRAMMouseClickOpacity = 1,
HISTOGRAMMouseClickStrokeColor = "none",
HISTOGRAMMouseClickStrokeWidth = "none",
HISTOGRAMMouseDownDisplay = FALSE,
HISTOGRAMMouseDownColor = "red",
HISTOGRAMMouseDownOpacity = 1,
HISTOGRAMMouseDownStrokeColor = "none",
HISTOGRAMMouseDownStrokeWidth = "none",
HISTOGRAMMouseEnterDisplay = FALSE,
HISTOGRAMMouseEnterColor = "red",
HISTOGRAMMouseEnterOpacity = 1,
HISTOGRAMMouseEnterStrokeColor = "none",
HISTOGRAMMouseEnterStrokeWidth = "none",
HISTOGRAMMouseLeaveDisplay = FALSE,
HISTOGRAMMouseLeaveColor = "red",
HISTOGRAMMouseLeaveOpacity = 1,
HISTOGRAMMouseLeaveStrokeColor = "none",
HISTOGRAMMouseLeaveStrokeWidth = "none",
HISTOGRAMMouseMoveDisplay = FALSE,
HISTOGRAMMouseMoveColor = "red",
HISTOGRAMMouseMoveOpacity = 1,
HISTOGRAMMouseMoveStrokeColor = "none",
HISTOGRAMMouseMoveStrokeWidth = "none",
HISTOGRAMMouseOutDisplay = FALSE,
HISTOGRAMMouseOutAnimationTime = 500,
HISTOGRAMMouseOutColor = "red",
HISTOGRAMMouseOutOpacity = 1,
HISTOGRAMMouseOutStrokeColor = "none",
HISTOGRAMMouseOutStrokeWidth = "none",
HISTOGRAMMouseUpDisplay = FALSE,
HISTOGRAMMouseUpColor = "red",
HISTOGRAMMouseUpOpacity = 1,
HISTOGRAMMouseUpStrokeColor = "none",
HISTOGRAMMouseUpStrokeWidth = "none",
HISTOGRAMMouseOverDisplay = FALSE,
HISTOGRAMMouseOverColor = "red",
HISTOGRAMMouseOverOpacity = 1,
HISTOGRAMMouseOverStrokeColor = "none",
HISTOGRAMMouseOverStrokeWidth = "none",
HISTOGRAMMouseOverTooltipsSetting = "style1",
HISTOGRAMMouseOverTooltipsHtml = " ",
HISTOGRAMMouseOverTooltipsPosition = "absolute",
HISTOGRAMMouseOverTooltipsBackgroundColor = "white",
HISTOGRAMMouseOverTooltipsBorderStyle = "solid",
HISTOGRAMMouseOverTooltipsBorderWidth = 0,
HISTOGRAMMouseOverTooltipsPadding = "3px",
HISTOGRAMMouseOverTooltipsBorderRadius = "3px",
HISTOGRAMMouseOverTooltipsOpacity = 1,
LINEMouseEvent = TRUE,
LINEMouseClickDisplay = FALSE,
LINEMouseClickLineOpacity = 1,
LINEMouseClickLineStrokeColor = "none",
LINEMouseClickLineStrokeWidth = "none",
LINEMouseDownDisplay = FALSE,
LINEMouseDownLineOpacity = 1,
LINEMouseDownLineStrokeColor = "none",
LINEMouseDownLineStrokeWidth = "none",
LINEMouseEnterDisplay = FALSE,
LINEMouseEnterLineOpacity = 1,
LINEMouseEnterLineStrokeColor = "none",
LINEMouseEnterLineStrokeWidth = "none",
LINEMouseLeaveDisplay = FALSE,
LINEMouseLeaveLineOpacity = 1,
LINEMouseLeaveLineStrokeColor = "none",
LINEMouseLeaveLineStrokeWidth = "none",
LINEMouseMoveDisplay = FALSE,
LINEMouseMoveLineOpacity = 1,
LINEMouseMoveLineStrokeColor = "none",
LINEMouseMoveLineStrokeWidth = "none",
LINEMouseOutDisplay = FALSE,
LINEMouseOutAnimationTime = 500,
LINEMouseOutLineOpacity = 1,
LINEMouseOutLineStrokeColor = "none",
LINEMouseOutLineStrokeWidth = "none",
LINEMouseUpDisplay = FALSE,
LINEMouseUpLineOpacity = 1,
LINEMouseUpLineStrokeColor = "none",
LINEMouseUpLineStrokeWidth = "none",
LINEMouseOverDisplay = FALSE,
LINEMouseOverLineOpacity = 1,
LINEMouseOverLineStrokeColor = "none",
LINEMouseOverLineStrokeWidth = "none",
LINEMouseOverTooltipsSetting = "style1",
LINEMouseOverTooltipsHtml = " ",
LINEMouseOverTooltipsPosition = "absolute",
LINEMouseOverTooltipsBackgroundColor = "white",
LINEMouseOverTooltipsBorderStyle = "solid",
LINEMouseOverTooltipsBorderWidth = 0,
LINEMouseOverTooltipsPadding = "3px",
LINEMouseOverTooltipsBorderRadius = "3px",
LINEMouseOverTooltipsOpacity = 1,
WIGMouseEvent = TRUE,
WIGMouseClickDisplay = FALSE,
WIGMouseClickLineOpacity = 1,
WIGMouseClickLineStrokeColor = "none",
WIGMouseClickLineStrokeWidth = "none",
WIGMouseClickFillColor = "none",
WIGMouseDownDisplay = FALSE,
WIGMouseDownLineOpacity = 1,
WIGMouseDownLineStrokeColor = "none",
WIGMouseDownLineStrokeWidth = "none",
WIGMouseDownFillColor = "none",
WIGMouseEnterDisplay = FALSE,
WIGMouseEnterLineOpacity = 1,
WIGMouseEnterLineStrokeColor = "none",
WIGMouseEnterLineStrokeWidth = "none",
WIGMouseEnterFillColor = "none",
WIGMouseLeaveDisplay = FALSE,
WIGMouseLeaveLineOpacity = 1,
WIGMouseLeaveLineStrokeColor = "none",
WIGMouseLeaveLineStrokeWidth = "none",
WIGMouseLeaveFillColor = "none",
WIGMouseMoveDisplay = FALSE,
WIGMouseMoveLineOpacity = 1,
WIGMouseMoveLineStrokeColor = "none",
WIGMouseMoveLineStrokeWidth = "none",
WIGMouseMoveFillColor = "none",
WIGMouseOutDisplay = FALSE,
WIGMouseOutAnimationTime = 500,
WIGMouseOutLineOpacity = 1,
WIGMouseOutLineStrokeColor = "none",
WIGMouseOutLineStrokeWidth = "none",
WIGMouseOutFillColor = "none",
WIGMouseUpDisplay = FALSE,
WIGMouseUpLineOpacity = 1,
WIGMouseUpLineStrokeColor = "none",
WIGMouseUpLineStrokeWidth = "none",
WIGMouseUpFillColor = "none",
WIGMouseOverDisplay = FALSE,
WIGMouseOverLineOpacity = 1,
WIGMouseOverLineStrokeColor = "none",
WIGMouseOverLineStrokeWidth = "none",
WIGMouseOverFillColor = "none",
WIGMouseOverTooltipsSetting = "style1",
WIGMouseOverTooltipsHtml = " ",
WIGMouseOverTooltipsPosition = "absolute",
WIGMouseOverTooltipsBackgroundColor = "white",
WIGMouseOverTooltipsBorderStyle = "solid",
WIGMouseOverTooltipsBorderWidth = 0,
WIGMouseOverTooltipsPadding = "3px",
WIGMouseOverTooltipsBorderRadius = "3px",
WIGMouseOverTooltipsOpacity = 1,
SCATTERxlink = FALSE,
SCATTERMouseEvent = TRUE,
SCATTERMouseClickDisplay = FALSE,
SCATTERMouseClickColor = "red",
SCATTERMouseClickCircleSize = 2,
SCATTERMouseClickCircleOpacity = 1,
SCATTERMouseClickCircleStrokeColor = "none",
SCATTERMouseClickCircleStrokeWidth = "none",
SCATTERMouseClickTextFromData = "fourth",
SCATTERMouseClickTextOpacity = 1,
SCATTERMouseClickTextColor = "red",
SCATTERMouseClickTextSize = 8,
SCATTERMouseClickTextPostionX = 1,
SCATTERMouseClickTextPostionY = 10,
SCATTERMouseClickTextDrag = TRUE,
SCATTERMouseDownDisplay = FALSE,
SCATTERMouseDownColor = "red",
SCATTERMouseDownCircleSize = 2,
SCATTERMouseDownCircleOpacity = 1,
SCATTERMouseDownCircleStrokeColor = "none",
SCATTERMouseDownCircleStrokeWidth = "none",
SCATTERMouseEnterDisplay = FALSE,
SCATTERMouseEnterColor = "red",
SCATTERMouseEnterCircleSize = 2,
SCATTERMouseEnterCircleOpacity = 1,
SCATTERMouseEnterCircleStrokeColor = "none",
SCATTERMouseEnterCircleStrokeWidth = "none",
SCATTERMouseLeaveDisplay = FALSE,
SCATTERMouseLeaveColor = "red",
SCATTERMouseLeaveCircleSize = 2,
SCATTERMouseLeaveCircleOpacity = 1,
SCATTERMouseLeaveCircleStrokeColor = "none",
SCATTERMouseLeaveCircleStrokeWidth = "none",
SCATTERMouseMoveDisplay = FALSE,
SCATTERMouseMoveColor = "red",
SCATTERMouseMoveCircleSize = 2,
SCATTERMouseMoveCircleOpacity = 1,
SCATTERMouseMoveCircleStrokeColor = "none",
SCATTERMouseMoveCircleStrokeWidth = "none",
SCATTERMouseOutDisplay = FALSE,
SCATTERMouseOutAnimationTime = 500,
SCATTERMouseOutColor = "red",
SCATTERMouseOutCircleSize = 2,
SCATTERMouseOutCircleOpacity = 1,
SCATTERMouseOutCircleStrokeColor = "none",
SCATTERMouseOutCircleStrokeWidth = "none",
SCATTERMouseUpDisplay = FALSE,
SCATTERMouseUpColor = "red",
SCATTERMouseUpCircleSize = 2,
SCATTERMouseUpCircleOpacity = 1,
SCATTERMouseUpCircleStrokeColor = "none",
SCATTERMouseUpCircleStrokeWidth = "none",
SCATTERMouseOverDisplay = FALSE,
SCATTERMouseOverColor = "red",
SCATTERMouseOverCircleSize = 2,
SCATTERMouseOverCircleOpacity = 1,
SCATTERMouseOverCircleStrokeColor = "none",
SCATTERMouseOverCircleStrokeWidth = "none",
SCATTERMouseOverTooltipsSetting = "style1",
SCATTERMouseOverTooltipsHtml = " ",
SCATTERMouseOverTooltipsPosition = "absolute",
SCATTERMouseOverTooltipsBackgroundColor = "white",
SCATTERMouseOverTooltipsBorderStyle = "solid",
SCATTERMouseOverTooltipsBorderWidth = 0,
SCATTERMouseOverTooltipsPadding = "3px",
SCATTERMouseOverTooltipsBorderRadius = "3px",
SCATTERMouseOverTooltipsOpacity = 1,
ARCxlink = FALSE,
ARCMouseEvent = TRUE,
ARCMouseClickDisplay = FALSE,
ARCMouseClickColor = "red",
ARCMouseClickArcOpacity = 1,
ARCMouseClickArcStrokeColor = "none",
ARCMouseClickArcStrokeWidth = "none",
ARCMouseClickTextFromData = "fourth",
ARCMouseClickTextOpacity = 1,
ARCMouseClickTextColor = "red",
ARCMouseClickTextSize = 8,
ARCMouseClickTextPostionX = 1,
ARCMouseClickTextPostionY = 10,
ARCMouseClickTextDrag = TRUE,
ARCMouseDownDisplay = FALSE,
ARCMouseDownColor = "red",
ARCMouseDownArcOpacity = 1,
ARCMouseDownArcStrokeColor = "none",
ARCMouseDownArcStrokeWidth = "none",
ARCMouseEnterDisplay = FALSE,
ARCMouseEnterColor = "red",
ARCMouseEnterArcOpacity = 1,
ARCMouseEnterArcStrokeColor = "none",
ARCMouseEnterArcStrokeWidth = "none",
ARCMouseLeaveDisplay = FALSE,
ARCMouseLeaveColor = "red",
ARCMouseLeaveArcOpacity = 1,
ARCMouseLeaveArcStrokeColor = "none",
ARCMouseLeaveArcStrokeWidth = "none",
ARCMouseMoveDisplay = FALSE,
ARCMouseMoveColor = "red",
ARCMouseMoveArcOpacity = 1,
ARCMouseMoveArcStrokeColor = "none",
ARCMouseMoveArcStrokeWidth = "none",
ARCMouseOutDisplay = FALSE,
ARCMouseOutAnimationTime = 500,
ARCMouseOutColor = "red",
ARCMouseOutArcOpacity = 1,
ARCMouseOutArcStrokeColor = "none",
ARCMouseOutArcStrokeWidth = "none",
ARCMouseUpDisplay = FALSE,
ARCMouseUpColor = "red",
ARCMouseUpArcOpacity = 1,
ARCMouseUpArcStrokeColor = "none",
ARCMouseUpArcStrokeWidth = "none",
ARCMouseOverDisplay = FALSE,
ARCMouseOverColor = "red",
ARCMouseOverArcOpacity = 1,
ARCMouseOverArcStrokeColor = "none",
ARCMouseOverArcStrokeWidth = "none",
ARCMouseOverTooltipsSetting = "style1",
ARCMouseOverTooltipsHtml = " ",
ARCMouseOverTooltipsPosition = "absolute",
ARCMouseOverTooltipsBackgroundColor = "white",
ARCMouseOverTooltipsBorderStyle = "solid",
ARCMouseOverTooltipsBorderWidth = 0,
ARCMouseOverTooltipsPadding = "3px",
ARCMouseOverTooltipsBorderRadius = "3px",
ARCMouseOverTooltipsOpacity = 1,
GENExlink = FALSE,
GENEMouseEvent = TRUE,
GENEMouseClickDisplay = FALSE,
GENEMouseClickColor = "red",
GENEMouseClickArcOpacity = 1,
GENEMouseClickArcStrokeColor = "none",
GENEMouseClickArcStrokeWidth = "none",
GENEMouseClickTextFromData = "fourth",
GENEMouseClickTextOpacity = 1,
GENEMouseClickTextColor = "red",
GENEMouseClickTextSize = 8,
GENEMouseClickTextPostionX = 1,
GENEMouseClickTextPostionY = 10,
GENEMouseClickTextDrag = TRUE,
GENEMouseDownDisplay = FALSE,
GENEMouseDownColor = "red",
GENEMouseDownArcOpacity = 1,
GENEMouseDownArcStrokeColor = "none",
GENEMouseDownArcStrokeWidth = "none",
GENEMouseEnterDisplay = FALSE,
GENEMouseEnterColor = "red",
GENEMouseEnterArcOpacity = 1,
GENEMouseEnterArcStrokeColor = "none",
GENEMouseEnterArcStrokeWidth = "none",
GENEMouseLeaveDisplay = FALSE,
GENEMouseLeaveColor = "red",
GENEMouseLeaveArcOpacity = 1,
GENEMouseLeaveArcStrokeColor = "none",
GENEMouseLeaveArcStrokeWidth = "none",
GENEMouseMoveDisplay = FALSE,
GENEMouseMoveColor = "red",
GENEMouseMoveArcOpacity = 1,
GENEMouseMoveArcStrokeColor = "none",
GENEMouseMoveArcStrokeWidth = "none",
GENEMouseOutDisplay = FALSE,
GENEMouseOutAnimationTime = 500,
GENEMouseOutColor = "red",
GENEMouseOutArcOpacity = 1,
GENEMouseOutArcStrokeColor = "none",
GENEMouseOutArcStrokeWidth = "none",
GENEMouseUpDisplay = FALSE,
GENEMouseUpColor = "red",
GENEMouseUpArcOpacity = 1,
GENEMouseUpArcStrokeColor = "none",
GENEMouseUpArcStrokeWidth = "none",
GENEMouseOverDisplay = FALSE,
GENEMouseOverColor = "red",
GENEMouseOverArcOpacity = 1,
GENEMouseOverArcStrokeColor = "none",
GENEMouseOverArcStrokeWidth = "none",
GENEMouseOverTooltipsSetting = "style1",
GENEMouseOverTooltipsHtml = " ",
GENEMouseOverTooltipsPosition = "absolute",
GENEMouseOverTooltipsBackgroundColor = "white",
GENEMouseOverTooltipsBorderStyle = "solid",
GENEMouseOverTooltipsBorderWidth = 0,
GENEMouseOverTooltipsPadding = "3px",
GENEMouseOverTooltipsBorderRadius = "3px",
GENEMouseOverTooltipsOpacity = 1,
LOLLIPOPxlink = FALSE,
LOLLIPOPMouseEvent = TRUE,
LOLLIPOPMouseClickDisplay = FALSE,
LOLLIPOPMouseClickColor = "red",
LOLLIPOPMouseClickCircleSize = 2,
LOLLIPOPMouseClickCircleOpacity = 1,
LOLLIPOPMouseClickCircleStrokeColor = "none",
LOLLIPOPMouseClickCircleStrokeWidth = "none",
LOLLIPOPMouseClickTextFromData = "fourth",
LOLLIPOPMouseClickTextOpacity = 1,
LOLLIPOPMouseClickTextColor = "red",
LOLLIPOPMouseClickTextSize = 8,
LOLLIPOPMouseClickTextPostionX = 1,
LOLLIPOPMouseClickTextPostionY = 10,
LOLLIPOPMouseClickTextDrag = TRUE,
LOLLIPOPMouseDownDisplay = FALSE,
LOLLIPOPMouseDownColor = "red",
LOLLIPOPMouseDownCircleSize = 2,
LOLLIPOPMouseDownCircleOpacity = 1,
LOLLIPOPMouseDownCircleStrokeColor = "none",
LOLLIPOPMouseDownCircleStrokeWidth = "none",
LOLLIPOPMouseEnterDisplay = FALSE,
LOLLIPOPMouseEnterColor = "red",
LOLLIPOPMouseEnterCircleSize = 2,
LOLLIPOPMouseEnterCircleOpacity = 1,
LOLLIPOPMouseEnterCircleStrokeColor = "none",
LOLLIPOPMouseEnterCircleStrokeWidth = "none",
LOLLIPOPMouseLeaveDisplay = FALSE,
LOLLIPOPMouseLeaveColor = "red",
LOLLIPOPMouseLeaveCircleSize = 2,
LOLLIPOPMouseLeaveCircleOpacity = 1,
LOLLIPOPMouseLeaveCircleStrokeColor = "none",
LOLLIPOPMouseLeaveCircleStrokeWidth = "none",
LOLLIPOPMouseMoveDisplay = FALSE,
LOLLIPOPMouseMoveColor = "red",
LOLLIPOPMouseMoveCircleSize = 2,
LOLLIPOPMouseMoveCircleOpacity = 1,
LOLLIPOPMouseMoveCircleStrokeColor = "none",
LOLLIPOPMouseMoveCircleStrokeWidth = "none",
LOLLIPOPMouseOutDisplay = FALSE,
LOLLIPOPMouseOutAnimationTime = 500,
LOLLIPOPMouseOutColor = "red",
LOLLIPOPMouseOutCircleSize = 2,
LOLLIPOPMouseOutCircleOpacity = 1,
LOLLIPOPMouseOutCircleStrokeColor = "none",
LOLLIPOPMouseOutCircleStrokeWidth = "none",
LOLLIPOPMouseUpDisplay = FALSE,
LOLLIPOPMouseUpColor = "red",
LOLLIPOPMouseUpCircleSize = 2,
LOLLIPOPMouseUpCircleOpacity = 1,
LOLLIPOPMouseUpCircleStrokeColor = "none",
LOLLIPOPMouseUpCircleStrokeWidth = "none",
LOLLIPOPMouseOverDisplay = FALSE,
LOLLIPOPMouseOverColor = "red",
LOLLIPOPMouseOverCircleSize = 2,
LOLLIPOPMouseOverCircleOpacity = 1,
LOLLIPOPMouseOverCircleStrokeColor = "none",
LOLLIPOPMouseOverCircleStrokeWidth = "none",
LOLLIPOPMouseOverTooltipsSetting = "style1",
LOLLIPOPMouseOverTooltipsHtml = " ",
LOLLIPOPMouseOverTooltipsPosition = "absolute",
LOLLIPOPMouseOverTooltipsBackgroundColor = "white",
LOLLIPOPMouseOverTooltipsBorderStyle = "solid",
LOLLIPOPMouseOverTooltipsBorderWidth = 0,
LOLLIPOPMouseOverTooltipsPadding = "3px",
LOLLIPOPMouseOverTooltipsBorderRadius = "3px",
LOLLIPOPMouseOverTooltipsOpacity = 1,
elementId = NULL,
...
)Module list displayed in plot.
Could be either 'hg19', which is defaultly set to use chromosomes of hg19, or a list of chromosomes with length, for example, list("chr1"=100,"chr2"=200).
Second genome when compare module is applied, format is same as genome
Could be either a color palette from RColorBrewer, or a list of color name, for example, list("yellow","rgb(1,255,255)")
Distance between each chromosome, default is 0.04
The width and height for svg element, could be px or percent or auto.
Default 216, Inner radius of chromosome
Default 240, Outer radius of chromosome
The svg class name
Should the reference genome have borders?
Whether display the ticks for chromosome panel. Other parameters only works when genomeTicksDisplay is TRUE and their details are available on document.
Whether display the label for chromosome panel. Other parameters only works when genomeTicksDisplay is TRUE and their details are available on document.
Default False, open/not COMPARE module
Default 0.1, control the two-side gap rate on each group of genome
Default 0, distance between two groups of genome
Whether or not the plot is zoomable?
Are text annotations draggable?
Default False, add/not xlink for CNV module
Default True, open/not open mouse event of CNV module
Default False, show/not the tooltip when mouse click on a CNV point.
Color when mouse clicking
Arc opacity when mouse clicking the element
Arc stroke color when mouse clicking the element
Arc stroke width when mouse clicking the element
Text column when mouse clicking the element
Text opacity when mouse clicking the element
Text color when mouse clicking the element
Text size when mouse clicking the element
Text coordinates when mouse clicking the element
Whether text is draggable when mouse clicking the element
Default False, show/not the tooltip when mouse click down a CNV point.
Color when mouse moving down the element
Arc opacity when mouse moving down the element
Arc stroke color when mouse moving down the element
Arc stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a CNV point.
Color when mouse entering the element
Arc opacity when mouse entering the element
Arc stroke color when mouse entering the element
Arc stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a CNV point.
Color when mouse leaving the element
Arc opacity when mouse leaving the element
Arc stroke color when mouse leaving the element
Arc stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a CNV point.
Color when mouse moving in the element
Arc opacity when mouse moving in the element
Arc stroke color when mouse moving in the element
Arc stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a CNV point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Arc opacity when mouse moving out the element
Arc stroke color when mouse moving out the element
Arc stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a CNV point.
Color when mouse moving up the element
Arc opacity when mouse clicking the element
Arc stroke color when mouse clicking the element
Arc stroke width when mouse clicking the element
Default False, show/not the tooltip when mouse hover on a CNV point.
Color when mouse moving over the element
Arc opacity when mouse moving over the element
Arc stroke color when mouse moving over the element
Arc stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default True, open/not open mouse event of HEATMAP module
Default False, show/not the tooltip when mouse click on a HEATMAP point.
Color when mouse clicking
Opacity when mouse clicking
Stroke color when mouse clicking
Stroke width when mouse clicking
Default False, show/not the tooltip when mouse click down a HEATMAP point.
Color when mouse moving down the element
Opacity when mouse moving down the element
Stroke color when mouse moving down the element
Stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a HEATMAP point.
Color when mouse entering the element
Opacity when mouse entering the element
Stroke color when mouse entering the element
Stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a HEATMAP point.
Color when mouse leaving the element
Opacity when mouse leaving the element
Stroke color when mouse leaving the element
Stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a HEATMAP point.
Color when mouse moving in the element
Opacity when mouse moving in the element
Stroke color when mouse moving in the element
Stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a HEATMAP point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Opacity when mouse moving out the element
Stroke color when mouse moving out the element
Stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a HEATMAP point.
Color when mouse moving up the element
Opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a HEATMAP point.
Color when mouse moving over the element
Opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default False, add/not xlink for BUBBLE module
Default True, open/not open mouse event of BUBBLE module
Default False, show/not the tooltip when mouse click on a BUBBLE point.
Color when mouse clicking
Opacity when mouse clicking
Stroke color when mouse clicking
Stroke width when mouse clicking
Default False, show/not the tooltip when mouse click down a BUBBLE point.
Color when mouse moving down the element
Opacity when mouse moving down the element
Stroke color when mouse moving down the element
Stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a BUBBLE point.
Color when mouse entering the element
Opacity when mouse entering the element
Stroke color when mouse entering the element
Stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a BUBBLE point.
Color when mouse leaving the element
Opacity when mouse leaving the element
Stroke color when mouse leaving the element
Stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a BUBBLE point.
Color when mouse moving in the element
Opacity when mouse moving in the element
Stroke color when mouse moving in the element
Stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a BUBBLE point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Opacity when mouse moving out the element
Stroke color when mouse moving out the element
Stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a BUBBLE point.
Color when mouse moving up the element
Opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a BUBBLE point.
Color when mouse moving over the element
Opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default False, add/not xlink for SNP module
Default True, open/not open mouse event of SNP module
Default False, open/not COMBINATION module for SNP module
Defalut False, open/not image display in COMBINATION module for SNP module
Title of the image
Size, weight and color of the title
Coordinates for image
Height and width of image
Defalut False, open/not graph display in COMBINATION module for SNP module
Title of the graph
Size, weight and color of the title
Type of graph
Coordinates for graph
Height and width for graph
Bar color of histogram graph
Padding between bar of histogram graph
Correction distance of X axis in histogram
Whether use auto color for pie graph or not
Color for pie graph if auto color is false
Size of pie graph
Whether each pie has a stroke or not
The stroke color and width for pie graph
Opacity for pie graph
Line type, color and width for line graph
Whether display the broken point in line graph
Size of broken point
Whether display the broken point in auto color
Color for broken point if auto color is false
Whether display the broken point stroke
The stroke color and width for broken point
Opacity for broken line
Correction distance of X axis for line
Defalut False, open/not text display in COMBINATION module for SNP module
The color, size and weight for text
The coordinates for text
Default False, show/not the tooltip when mouse click on a SNP point.
Color after clicking the element
Circle size after clicking the element
Opacity after clicking the element
Stroke color after clicking the element
Stroke width after clicking the element
First,second,third,fourth column data click to show
Text opacity after clicking the element
Text color after clicking the element
Text size after clicking the element
Text coordinate after clicking the element
Whether text is draggable for element
Default False, show/not the tooltip when mouse click down a SNP point.
Color after mouse moving down the element
Circle size after mouse moving down the element
Circle opacity after mouse moving down the element
Circle stroke color after mouse moving down the element
Circle stroke width after mouse moving down the element
Default False, show/not the tooltip when mouse mover over a SNP point.
Color after mouse entering enter the element
Circle size after mouse entering the element
Circle opacity after mouse entering the element
Circle stroke color after mouse entering the element
Circle stroke width after mouse entering the element
Default False, show/not the tooltip when mouse mover leave a SNP point.
Color after mouse leaving the element
Circle size after mouse leaving the element
Circle opacity after mouse leaving the element
Circle stroke color after mouse leaving the element
Circle stroke width after mouse leaving the element
Default False, show/not the tooltip when mouse move into a SNP point.
Color after mouse moving in the element
Circle size after mouse moving in the element
Circle opacity after mouse moving in the element
Circle stroke color after mouse moving in the element
Circle stroke width after mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a SNP point anymore.
Animation time when mouse moving over the element
Color when mouse moving over the element
Circle size when mouse moving over the element
Opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Default False, show/not the tooltip when mouse click up a SNP point.
Color after mouse moving up the element
Circle size after mouse moving up the element
Circle opacity after mouse moving up the element
Circle stroke color after mouse moving up the element
Circle stroke width after mouse moving up the element
Default False, show/not the tooltip when mouse hover on a SNP point.
Color after mouse moving over the element
Circle size after mouse moving over the element
Circle opacity after mouse moving over the element
Circle stroke color after mouse moving over the element
Circle stroke width after mouse moving over the element
Default "chr : "
Default " "
Position for tooltips when mouse moving over
Background color for tooltips when mouse moving over
Border style for tooltips when mouse moving over
Border width for tooltips when mouse moving over
Padding for tooltips when mouse moving over
Border radius for tooltips when mouse moving over
Opacity for tooltips when mouse moving over
Default False, add/not xlink for LINK module
Default True, open/not open mouse event of LINK module
Default False, show/not the tooltip when mouse click on a LINK point.
Opacity when mouse clicking
Stroke color when mouse clicking
Stroke width when mouse clicking
Default False, show/not the tooltip when mouse click down a LINK point.
Opacity when mouse moving down the element
Stroke color when mouse moving down the element
Stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a LINK point.
Opacity when mouse entering the element
Stroke color when mouse entering the element
Stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a LINK point.
Opacity when mouse leaving the element
Stroke color when mouse leaving the element
Stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a LINK point.
Opacity when mouse moving in the element
Stroke color when mouse moving in the element
Stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a LINK point anymore.
Animation time when mouse moving out the element
Opacity when mouse moving out the element
Stroke color when mouse moving out the element
Stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a LINK point.
Opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a LINK point.
Opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Defalut False, draggable for the label of LINK module
Default True, open/not open mouse event of CHORD module from NG-Circos.
A type of color in character, chord in this color will be hided
Default False, show/not the tooltip when mouse click on a CHORD point.
Opacity when mouse clicking
Stroke color when mouse clicking
Stroke width when mouse clicking
Default False, show/not the tooltip when mouse click down a CHORD point.
Opacity when mouse moving down the element
Stroke color when mouse moving down the element
Stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a CHORD point.
Opacity when mouse entering the element
Stroke color when mouse entering the element
Stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a CHORD point.
Opacity when mouse leaving the element
Stroke color when mouse leaving the element
Stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a CHORD point.
Opacity when mouse moving in the element
Stroke color when mouse moving in the element
Stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a CHORD point anymore.
Animation time when mouse moving out the element
Opacity when mouse moving out the element
Stroke color when mouse moving out the element
Stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a CHORD point.
Opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a CHORD point.
Opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Default False, add/not xlink for HISTOGRAM module
Default True, open/not open mouse event of HISTOGRAM module
Default False, show/not the tooltip when mouse click on a HISTOGRAM point.
Color when mouse clicking
Opacity when mouse clicking
Stroke color when mouse clicking
Stroke width when mouse clicking
Default False, show/not the tooltip when mouse click down a HISTOGRAM point.
Color when mouse moving down the element
Opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse mover over a HISTOGRAM point.
Color when mouse entering the element
Opacity when mouse entering the element
Stroke color when mouse entering the element
Stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a HISTOGRAM point.
Color when mouse leaving the element
Opacity when mouse leaving the element
Stroke color when mouse leaving the element
Stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a HISTOGRAM point.
Color when mouse moving in the element
Opacity when mouse moving in the element
Stroke color when mouse moving in the element
Stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a HISTOGRAM point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Opacity when mouse moving out the element
Stroke color when mouse moving out the element
Stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a HISTOGRAM point.
Color when mouse moving up the element
Opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a HISTOGRAM point.
Color when mouse moving over the element
Opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default True, open/not open mouse event of LINE module
Default False, show/not the tooltip when mouse click on a LINE point.
Line opacity when mouse clicking the element
Stroke color when mouse clicking the element
Stroke width when mouse clicking the element
Default False, show/not the tooltip when mouse click down a LINE point.
Line opacity when mouse moving down the element
Stroke color when mouse moving down the element
Stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a LINE point.
Line opacity when mouse entering the element
Stroke color when mouse entering the element
Stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a LINE point.
Line opacity when mouse leaving the element
Stroke color when mouse leaving the element
Stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a LINE point.
Line opacity when mouse moving in the element
Stroke color when mouse moving in the element
Stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a LINE point anymore.
Animation time when mouse moving out the element
Line opacity when mouse moving out the element
Stroke color when mouse moving out the element
Stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a LINE point.
Line opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a LINE point.
Line opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default True, open/not open mouse event of WIG module
Default False, show/not the tooltip when mouse click on a WIG point.
Line opacity when mouse clicking the element
Stroke color when mouse clicking the element
Stroke width when mouse clicking the element
Filling color when mouse clicking the element
Default False, show/not the tooltip when mouse click down a WIG point.
Line opacity when mouse moving down the element
Stroke color when mouse moving down the element
Stroke width when mouse moving down the element
Filling color when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a WIG point.
Line opacity when mouse entering the element
Stroke color when mouse entering the element
Stroke width when mouse entering the element
Filling color when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a WIG point.
Line opacity when mouse leaving the element
Stroke color when mouse leaving the element
Stroke width when mouse leaving the element
Filling color when mouse leaving the element
Default False, show/not the tooltip when mouse move into a WIG point.
Line opacity when mouse moving in the element
Stroke color when mouse moving in the element
Stroke width when mouse moving in the element
Filling color when mouse leaving the element
Defalut False, hide/not tooltip when mouse is not hovering a WIG point anymore.
Animation time when mouse moving out the element
Line opacity when mouse moving out the element
Stroke color when mouse moving out the element
Stroke width when mouse moving out the element
Filling color when mouse moving out the element
Default False, show/not the tooltip when mouse click up a WIG point.
Line opacity when mouse moving up the element
Stroke color when mouse moving up the element
Stroke width when mouse moving up the element
Filling color when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a WIG point.
Line opacity when mouse moving over the element
Stroke color when mouse moving over the element
Stroke width when mouse moving over the element
Filling color when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default False, add/not xlink for SCATTER module
Default True, open/not open mouse event of SCATTER module
Default False, show/not the tooltip when mouse click on a SCATTER point.
Color when mouse clicking the element
Circle size when mouse clicking the element
Circle opacity when mouse clicking the element
Circle stroke color when mouse clicking the element
Circle stroke width when mouse clicking the element
Text column when mouse clicking the element
Text opacity when mouse clicking the element
Text color when mouse clicking the element
Text size when mouse clicking the element
Text coordinates when mouse clicking the element
Whether text is draggable when clicing element
Default False, show/not the tooltip when mouse click down a SCATTER point.
Color when mouse moving down the element
Circle size when mouse moving down the element
Circle opacity when mouse moving down the element
Circle stroke color when mouse moving down the element
Circle stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a SCATTER point.
Color when mouse entering the element
Circle size when mouse entering the element
Circle opacity when mouse entering the element
Circle stroke color when mouse entering the element
Circle stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a SCATTER point.
Color when mouse leaving the element
Circle size when mouse leaving the element
Circle opacity when mouse leaving the element
Circle stroke color when mouse leaving the element
Circle stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a SCATTER point.
Color when mouse moving in the element
Circle size when mouse moving in the element
Circle opacity when mouse moving in the element
Circle stroke color when mouse moving in the element
Circle stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a SCATTER point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Circle size when mouse moving out the element
Circle opacity when mouse moving out the element
Circle stroke color when mouse moving out the element
Circle stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a SCATTER point.
Color when mouse moving up the element
Circle size when mouse moving up the element
Circle opacity when mouse moving up the element
Circle stroke color when mouse moving up the element
Circle stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a SCATTER point.
Color when mouse moving over the element
Circle size when mouse moving over the element
Circle opacity when mouse moving over the element
Circle stroke color when mouse moving over the element
Circle stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default False, add/not xlink for ARC module
Default True, open/not open mouse event of ARC module
Default False, show/not the tooltip when mouse click on a ARC point.
Color when mouse clicking the element
Arc opacity when mouse clicking the element
Arc stroke color when mouse clicking the element
Arc stroke width when mouse clicking the element
Text column when mouse clicking the element
Text opacity when mouse clicking the element
Text color when mouse clicking the element
Text size when mouse clicking the element
Text coordinates when mouse clicking the element
Whether text is draggable when mouse clicking the element
Default False, show/not the tooltip when mouse click down a ARC point.
Color when mouse moving down the element
Arc opacity when mouse moving down the element
Arc stroke color when mouse moving down the element
Arc stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a ARC point.
Color when mouse entering the element
Arc opacity when mouse entering the element
Arc stroke color when mouse entering the element
Arc stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a ARC point.
Color when mouse leaving the element
Arc opacity when mouse leaving the element
Arc stroke color when mouse leaving the element
Arc stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a ARC point.
Color when mouse moving in the element
Arc opacity when mouse moving in the element
Arc stroke color when mouse moving in the element
Arc stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a ARC point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Arc opacity when mouse moving out the element
Arc stroke color when mouse moving out the element
Arc stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a ARC point.
Color when mouse moving up the element
Arc opacity when mouse moving up the element
Arc stroke color when mouse moving up the element
Arc stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a ARC point.
Color when mouse moving over the element
Arc opacity when mouse moving over the element
Arc stroke color when mouse moving over the element
Arc stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default False, add/not xlink for GENE module
Default True, open/not open mouse event of GENE module
Default False, show/not the tooltip when mouse click on a GENE point.
Color when mouse clicking the element
Arc opacity when mouse clicking the element
Arc stroke color when mouse clicking the element
Arc stroke width when mouse clicking the element
Text column when mouse clicking the element
Text opacity when mouse clicking the element
Text color when mouse clicking the element
Text size when mouse clicking the element
Text coordinates when mouse clicking the element
Whether text is draggable when mouse clicking the element
Default False, show/not the tooltip when mouse click down a GENE point.
Color when mouse moving down the element
Arc opacity when mouse moving down the element
Arc stroke color when mouse moving down the element
Arc stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a GENE point.
Color when mouse entering the element
Arc opacity when mouse entering the element
Arc stroke color when mouse entering the element
Arc stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a GENE point.
Color when mouse leaving the element
Arc opacity when mouse leaving the element
Arc stroke color when mouse leaving the element
Arc stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a GENE point.
Color when mouse moving in the element
Arc opacity when mouse moving in the element
Arc stroke color when mouse moving in the element
Arc stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a GENE point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Arc opacity when mouse moving out the element
Arc stroke color when mouse moving out the element
Arc stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a GENE point.
Color when mouse moving up the element
Arc opacity when mouse moving up the element
Arc stroke color when mouse moving up the element
Arc stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a GENE point.
Color when mouse moving over the element
Arc opacity when mouse moving over the element
Arc stroke color when mouse moving over the element
Arc stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
Default False, add/not xlink for LOLLIPOP module
Default True, open/not open mouse event of LOLLIPOP module
Default False, show/not the tooltip when mouse click on a LOLLIPOP point.
Color when mouse clicking
Circle size when mouse clicking the element
Circle opacity when mouse clicking the element
Circle stroke color when mouse clicking the element
Circle stroke width when mouse clicking the element
Text column when mouse clicking the element
Text opacity when mouse clicking the element
Text color when mouse clicking the element
Text size when mouse clicking the element
Text coordinates when mouse clicking the element
Whether text is draggable when mouse clicking the element
Default False, show/not the tooltip when mouse click down a LOLLIPOP point.
Color when mouse moving down the element
Circle size when mouse moving down the element
Circle opacity when mouse moving down the element
Circle stroke color when mouse moving down the element
Circle stroke width when mouse moving down the element
Default False, show/not the tooltip when mouse mover over a LOLLIPOP point.
Color when mouse entering the element
Circle size when mouse entering the element
Circle opacity when mouse entering the element
Circle stroke color when mouse entering the element
Circle stroke width when mouse entering the element
Default False, show/not the tooltip when mouse mover leave a LOLLIPOP point.
Color when mouse leaving the element
Circle size when mouse leaving the element
Circle opacity when mouse leaving the element
Circle stroke color when mouse leaving the element
Circle stroke width when mouse leaving the element
Default False, show/not the tooltip when mouse move into a LOLLIPOP point.
Color when mouse moving in the element
Circle size when mouse moving in the element
Circle opacity when mouse moving in the element
Circle stroke color when mouse moving in the element
Circle stroke width when mouse moving in the element
Defalut False, hide/not tooltip when mouse is not hovering a LOLLIPOP point anymore.
Animation time when mouse moving out the element
Color when mouse moving out the element
Circle size when mouse moving out the element
Circle opacity when mouse moving out the element
Circle stroke color when mouse moving out the element
Circle stroke width when mouse moving out the element
Default False, show/not the tooltip when mouse click up a LOLLIPOP point.
Color when mouse moving up the element
Circle size when mouse moving up the element
Circle opacity when mouse moving up the element
Circle stroke color when mouse moving up the element
Circle stroke width when mouse moving up the element
Default False, show/not the tooltip when mouse hover on a LOLLIPOP point.
Color when mouse moving over the element
Circle size when mouse moving over the element
Circle opacity when mouse moving over the element
Circle stroke color when mouse moving over the element
Circle stroke width when mouse moving over the element
Default "style1"
Default " "
Default "absolute"
Default "white"
Default "solid"
Default 0
Default "3px"
Default "3px"
Default 0.8
the name of the HTML id to be used to contain the visualization.
Ignored
The main figure for interacCircos with all tracks.
# NOT RUN {
Circos(genome = "hg19")
# }
Run the code above in your browser using DataLab