interacCircos (version 1.0.0)

CircosArc: Create a ARC module to a moduleList

Description

Display the CNV without value, Gene domain, Chromosome band in the visualization

Usage

CircosArc(
  modulename,
  compareGroup = 1,
  outerRadius = 150,
  innerRadius = 130,
  opacity = 1,
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename

The name of the new module.

compareGroup

The group number of this module in compare module

innerRadius, outerRadius

Where the module should begin and end

opacity

The opacity for arc

animationDisplay

Whether display animation

animationTime, animationDelay, animationType

The time, delay and display type for animation

data

A list of arc with details including chr, start, end, color, des, link and html. Details can be found on document.

...

Ignored

Value

The module tracks for arc modules.

Examples

# NOT RUN {
arcData<-arcExample
Circos(CircosArc('Arc01', outerRadius = 212, innerRadius = 224, data=arcData),
 genome=list("EGFR"=1211),outerRadius = 220,genomeFillColor = c("grey"))

# }