interacCircos (version 1.0.0)

CircosHistogram: Create a HISTOGRAM module to a moduleList

Description

Display a multi-layer histogram in circos

Usage

CircosHistogram(
  modulename,
  compareGroup = 1,
  maxRadius = 108,
  minRadius = 95,
  ValueAxisManualScale = FALSE,
  ValueAxisMaxScale = 10,
  ValueAxisMinScale = 0,
  fillColor = "red",
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 20,
  data,
  ...
)

Arguments

modulename

The name of the new module.

compareGroup

The group number of this module in compare module

maxRadius, minRadius

Where the module should begin and end

ValueAxisManualScale

Whether manually control the scale of value

ValueAxisMaxScale, ValueAxisMinScale

The max and min scale value for manually control

fillColor

The color for histgram.

animationDisplay

Whether display animation

animationTime, animationDelay

The time and delay for animation

data

A list of value with details including chr, start, end, name, link, value and html. Details can be found on document.

...

Ignored

Value

The module tracks for histogram modules.

Examples

# NOT RUN {
histogramData<-histogramExample
Circos(CircosHistogram('HISTOGRAM01', data = histogramData,fillColor= "#ff7f0e",maxRadius = 210,
minRadius = 175),genome=list("2L"=23011544,"2R"=21146708,"3L"=24543557,"3R"= 27905053,
"X"=22422827,"4"=1351857),
outerRadius = 220)

# }