interacCircos (version 1.0.0)

CircosLink: Create a LINK module to a moduleList

Description

Link two specific region in genome.

Usage

CircosLink(
  modulename,
  compareGroup = 1,
  radius = 108,
  fillColor = "red",
  width = 3,
  type = "Q",
  displayLinkAxis = TRUE,
  axisColor = "#B8B8B8",
  axisWidth = 0.5,
  axisPad = 3,
  displayLinkLabel = TRUE,
  labelColor = "red",
  labelSize = 13,
  labelPad = 8,
  animationDisplay = FALSE,
  animationDirection = "1to2",
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename

The name of the new module.

compareGroup

The group number of thic module in compare module

radius

Radius of link circle.

fillColor

Color for link.

width

Width for link.

type

Type of link, could be Q/S/T

displayLinkAxis

Whether display axis for link or not

axisColor

The color for axis

axisWidth

The width for axis

axisPad

The pad for axis

displayLinkLabel

Whether display label for link or not

labelColor

The color for label

labelSize

The size for label

labelPad

The pad for label

animationDisplay

Whether display animation

animationDirection

The direction of link animation, could be 1to2 or 2to1

animationTime, animationDelay, animationType

The time, delay and display type for animation

data

A list of link with details including g1chr, g1start, g1end, g2chr, g2start, g2end, g1name, g2name, fusion, link and html. Details can be found on document.

...

Ignored

Value

The module tracks for link modules.

Examples

# NOT RUN {
linkData<-linkExample
Circos(CircosLink('LINK', data = linkData,LinkRadius= 140,fillColor= "#9e9ac6",width= 2,
axisPad= 3,labelPad=8,animationDisplay=TRUE,animationDirection="1to2", animationType= "linear" ))

# }