arcExample

The data is in matrix with column names

datasets

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Zhe Cui

interacCircos

The Visualization of Interactive Circos Plot

arcExample function

A data frame with 7 columns:<dl class="dl-horizontal">
 <dt>chr</dt><dd>chromosome</dd>
 <dt>start</dt><dd>start position</dd>
 <dt>end</dt><dd>end position</dd>
 <dt>color</dt><dd>color</dd>
 <dt>des</dt><dd>description</dd>
 <dt>link</dt><dd>hyperlink</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

Format

Arc plot example data — arcExample

A data frame with 7 columns:<dl class='dl-horizontal'>
 <dt>chr</dt><dd>chromosome</dd>
 <dt>start</dt><dd>start position</dd>
 <dt>end</dt><dd>end position</dd>
 <dt>color</dt><dd>color</dd>
 <dt>des</dt><dd>description</dd>
 <dt>link</dt><dd>hyperlink</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

arcExample: Arc plot example data

Description

Usage

Arguments

Format