chord.pExample

The data is in matrix with column names

datasets

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Zhe Cui

interacCircos

The Visualization of Interactive Circos Plot

chord.pExample function

A data frame in which each row represents the relationship from one genome position(source) to 
another one(target):<dl class="dl-horizontal">
 <dt>source_chr</dt><dd>chromosome name of source</dd>
 <dt>source_start</dt><dd>start position of source</dd>
 <dt>source_end</dt><dd>end position of source</dd>
 <dt>target_chr</dt><dd>chromosome name of target</dd>
 <dt>target_start</dt><dd>start position of target</dd>
 <dt>target_end</dt><dd>end position of target</dd>
</dl>

Format

Example data of chord plot of circosJS — chord.pExample

A data frame in which each row represents the relationship from one genome position(source) to 
another one(target):<dl class='dl-horizontal'>
 <dt>source_chr</dt><dd>chromosome name of source</dd>
 <dt>source_start</dt><dd>start position of source</dd>
 <dt>source_end</dt><dd>end position of source</dd>
 <dt>target_chr</dt><dd>chromosome name of target</dd>
 <dt>target_start</dt><dd>start position of target</dd>
 <dt>target_end</dt><dd>end position of target</dd>
</dl>

chord.pExample: Example data of chord plot of circosJS

Description

Usage

Arguments

Format