geneExample

The data is in matrix with column names

datasets

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Zhe Cui

interacCircos

The Visualization of Interactive Circos Plot

geneExample function

A data frame with 8 columns:<dl class="dl-horizontal">
 <dt>chr</dt><dd>chromosome</dd>
 <dt>strand</dt><dd>strand, - or +</dd>
 <dt>start</dt><dd>start position</dd>
 <dt>end</dt><dd>end position</dd>
 <dt>type</dt><dd>region type, gene or utr or cds</dd>
 <dt>name</dt><dd>name for description</dd>
 <dt>link</dt><dd>hyperlink for this region</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

Format

Gene plot example data — geneExample

A data frame with 8 columns:<dl class='dl-horizontal'>
 <dt>chr</dt><dd>chromosome</dd>
 <dt>strand</dt><dd>strand, - or +</dd>
 <dt>start</dt><dd>start position</dd>
 <dt>end</dt><dd>end position</dd>
 <dt>type</dt><dd>region type, gene or utr or cds</dd>
 <dt>name</dt><dd>name for description</dd>
 <dt>link</dt><dd>hyperlink for this region</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

geneExample: Gene plot example data

Description

Usage

Arguments

Format