linkExample

The data is in matrix with column names

datasets

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Zhe Cui

interacCircos

The Visualization of Interactive Circos Plot

linkExample function

A data frame with 11 columns:<dl class="dl-horizontal">
 <dt>g1chr</dt><dd>first chromosome</dd>
 <dt>g1start</dt><dd>first start position</dd>
 <dt>g1end</dt><dd>first end position</dd>
 <dt>g2chr</dt><dd>second chromosome</dd>
 <dt>g2start</dt><dd>second start position</dd>
 <dt>g2end</dt><dd>second end position</dd>
 <dt>g1name</dt><dd>first name</dd>
 <dt>g2name</dt><dd>second name</dd>
 <dt>fusion</dt><dd>fusion name</dd>
 <dt>link</dt><dd>hyperlink for link line</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

Format

Link plot example data — linkExample

A data frame with 11 columns:<dl class='dl-horizontal'>
 <dt>g1chr</dt><dd>first chromosome</dd>
 <dt>g1start</dt><dd>first start position</dd>
 <dt>g1end</dt><dd>first end position</dd>
 <dt>g2chr</dt><dd>second chromosome</dd>
 <dt>g2start</dt><dd>second start position</dd>
 <dt>g2end</dt><dd>second end position</dd>
 <dt>g1name</dt><dd>first name</dd>
 <dt>g2name</dt><dd>second name</dd>
 <dt>fusion</dt><dd>fusion name</dd>
 <dt>link</dt><dd>hyperlink for link line</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

linkExample: Link plot example data

Description

Usage

Arguments

Format