lollipopExample

The data is in matrix with column names

datasets

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Zhe Cui

interacCircos

The Visualization of Interactive Circos Plot

lollipopExample function

A data frame with 12 columns:<dl class="dl-horizontal">
 <dt>protein</dt><dd>protein name</dd>
 <dt>chr</dt><dd>chromosome</dd>
 <dt>pos</dt><dd>position</dd>
 <dt>strand</dt><dd>strand, - or +</dd>
 <dt>CancerTypeNumber</dt><dd>Cancer type number</dd>
 <dt>color</dt><dd>color</dd>
 <dt>link</dt><dd>hyperlink</dd>
 <dt>Consequence</dt><dd>consequence</dd>
 <dt>AA_pos</dt><dd>AA_pos</dd>
 <dt>AA_change</dt><dd>AA_change</dd>
 <dt>type</dt><dd>type for mutation,Hetero or Homo</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

Format

Lollipop plot example data — lollipopExample

A data frame with 12 columns:<dl class='dl-horizontal'>
 <dt>protein</dt><dd>protein name</dd>
 <dt>chr</dt><dd>chromosome</dd>
 <dt>pos</dt><dd>position</dd>
 <dt>strand</dt><dd>strand, - or +</dd>
 <dt>CancerTypeNumber</dt><dd>Cancer type number</dd>
 <dt>color</dt><dd>color</dd>
 <dt>link</dt><dd>hyperlink</dd>
 <dt>Consequence</dt><dd>consequence</dd>
 <dt>AA_pos</dt><dd>AA_pos</dd>
 <dt>AA_change</dt><dd>AA_change</dd>
 <dt>type</dt><dd>type for mutation,Hetero or Homo</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

lollipopExample: Lollipop plot example data

Description

Usage

Arguments

Format