snpExample

The data is in matrix with column names

datasets

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Zhe Cui

interacCircos

The Visualization of Interactive Circos Plot

snpExample function

A data frame with 10 columns:<dl class="dl-horizontal">
 <dt>chr</dt><dd>chromosome</dd>
 <dt>pos</dt><dd>position</dd>
 <dt>value</dt><dd>value,such as p-value</dd>
 <dt>des</dt><dd>description</dd>
 <dt>color</dt><dd>color</dd>
 <dt>r2value</dt><dd>r2 value</dd>
 <dt>link</dt><dd>hyperlink for snp</dd>
 <dt>index</dt><dd>index for combination</dd>
 <dt>image</dt><dd>image for combination</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

Format

Snp plot example data — snpExample

A data frame with 10 columns:<dl class='dl-horizontal'>
 <dt>chr</dt><dd>chromosome</dd>
 <dt>pos</dt><dd>position</dd>
 <dt>value</dt><dd>value,such as p-value</dd>
 <dt>des</dt><dd>description</dd>
 <dt>color</dt><dd>color</dd>
 <dt>r2value</dt><dd>r2 value</dd>
 <dt>link</dt><dd>hyperlink for snp</dd>
 <dt>index</dt><dd>index for combination</dd>
 <dt>image</dt><dd>image for combination</dd>
 <dt>html</dt><dd>The external html language</dd>
</dl>

snpExample: Snp plot example data

Description

Usage

Arguments

Format