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interep (version 0.2.0)

Interaction Analysis of Repeatedly Measured Data

Description

Extensive penalized variable selection methods have been developed in the past two decades for analyzing high dimensional omics data, such as gene expressions, single nucleotide polymorphisms (SNPs), copy number variations (CNVs) and others. However, lipidomics data have been rarely investigated by using high dimensional variable selection methods. This package incorporates our recently developed penalization procedures to conduct interaction analysis for high dimensional lipidomics data with repeated measurements. The core module of this package is developed in C++. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.

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install.packages('interep')

Monthly Downloads

262

Version

0.2.0

License

GPL-2

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Maintainer

Fei Zhou

Last Published

November 10th, 2018

Functions in interep (0.2.0)

dat

simulated data for demonstrating the features of interep
CorrR

This function obtains the correlation matrix of longitudinal data
interep

fit a generalized estimating equation with given lambda
reformat

This function changes the format of the longitudinal data from wide format to long format
dmcp

This function obtains the first derivative function of MCP (Minimax Concave Penalty)
cv.interep

k-folds cross-validation for interep