Usage
icScoreTest(icFIT, group, scores, alternative = "two.sided", tol.svd = 10^-8)
icWSR(fit, group, scores, alternative, type, control)
wsrHLYpclt(A, p, x, group, alternative, nwsr, type, RHO)
wsrMC(A, p, x, group, alternative, nwsr, np, digits = 12)
scoresFromFit(icFIT, scores, dqfunc=NULL)
Arguments
icFIT
icfit object from all the data
group
group vector, either numeric or character
scores
either 'logrank1', 'logrank2', or 'wmw'
alternative
either 'less','greater','two.sided', or 'two.sidedAbs'
tol.svd
small number, values less than that set to zero in svd
fit
icfit object from all the data
type
either 'wsr.pclt','wsr.HLY', or 'wsr.mc'
control
list passing options to function, see mControl nwsr
number of within subject resamples
np
number of permutation replications within each wsr
digits
for ties, treat values as tied when matched to this number of digits
A
A matrix from icfit object on all data
p
pf vector from icfit object on all data
x
vector of scores associated with each value of p
dqfunc
function, density of the results of the quantile function, e.g., function(x){dnorm(qnorm(x))} (used for 'general' scores,
see ictest)