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invivoPKfit (version 2.0.1)

cvt: CvTdb data

Description

Concentration vs. time data from CvTdb

Usage

cvt

Arguments

Format

A `data.frame` with 13937 rows and 61 variables:

conc_time_id

Unique database identifier for each CvT observation.

time_original

Timepoint in original units.

time_hr

Timepoint in hours.

conc_original

Concentration in original units.

conc_sd_original

Standard deviation of concentration in original units.

conc

Concentration in normalized units.

conc_sd

Standard deviation of concentration in normalized units.

fk_series_id

Unique database identifier for experimental series.

analyte_name_original

Original analyte name.

analyte_dtxsid

DTXSID of chemical analyte.

analyte_casrn

CASRN of chemical analyte.

fk_analyzed_chemical_id

Unique database identifier for analyte.

fk_test_chemical_id

Unique database identifier for tested chemical.

test_substance_dtxsid

DTXSID of tested chemical.

analyte_name_secondary_original

Alternative names for analyte.

conc_medium_normalized

Standardized media names, blood or plasma.

conc_medium_original

Original media names.

time_units_original

Original time units.

conc_units_original

Original concentration units.

conc_units_normalized

Normalized concentration units.

conc_unit_norm_factor

Ratio of conc/conc_original

loq

Level of quantification.

loq_units

Units for loq.

n_subjects_in_series

Number of subjects in each series.

radiolabeled

Answers whether this observation comes from a radiolabelling or isotope tracing experiment.

fk_study_id

Unique database identifier for each study.

administration_route_normalized

Route of exposure/administration, either oral or iv.

fk_dosed_chemical_id

Unique database identifier for dosed chemical.

dose_volume

Volume of dose.

dose_volume_units

Units for dose_volume.

dose_vehicle

If available, specifies what vehicle was used CvT experiment.

dose_duration

Duration of the dose, if available.

dose_duration_units

Units for dose_duration.

dose_frequency

Frequency of dosing, these should all be 1 for a single bolus.

fasting_period

If available, describes the fasting period for subjects.

dose_level_normalized

Dose levels in normalized units.

dose_level_original

Dose levels in original units.

dose_level_units_original

Units for dose_level_original.

fk_subject_id

Unique database identifier for each subject.

weight_kg

Subject weight, in kilograms.

species

Subject species.

sex

Subject sex, if available.

age

Subject age, if available.

age_units

Units for age.

age_category

Categories for age.

fk_extraction_document_id

Unique database identifier for documents that were curated.

pmid

Document PubMed ID.

year

Year of publication.

other_study_identifier

Alternative identifier for documents, used for NTP studies.

url

Document URL address.

doi

Document DOI.

extracted

Curation level of document.

curation_set_tag

A grouping tag for specific document extraction and curation efforts.

n_subjects_normalized

Normalized subject number.

invivPK_dose_level_units

dose_level_units used in this package, mg/kg.

invivPK_conc_units

conc_units used in this package, ug/mL

invivPK_conc

Concentrations normalized to ug/mL

invivPK_dose_level

Dose normalized to mg/kg

invivPK_loq

Level of quantification in ug/mL

invivPK_loq_units

LOQ units used in this package, ug/mL.

invivPK_conc_sd

Standard deviation of concentrations, in ug/mL.

Details

This is concentration vs. time data from CvTdb, most recently downloaded as of the date in [`cvt_date`].

These data have been filtered to retain only oral and intravenous administration, and only measurements in blood and plasma. They have also been filtered to retain only observations where the same chemical was both administered and measured in blood/plasma (i.e., excluding observations where a metabolite was measured).