coverage

<p>A matrix of sequencing coverages from semiconductor sequencing</p>

datasets

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Jan Budczies

ioncopy

Calling Copy Number Alterations in Amplicon Sequencing Data

coverage function

<p>Matrix containing the sequencing coverages of 154 samples (breast carcinomas)
and 184 variables (amplicons).</p>

coverage: Coverage data of 154 amplicons in 184 breast carcinomas

Description

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Examples