summarize.CNA

List of CNA calls generated by <code><a rd-options="" href="/link/call.CNA?package=ioncopy&version=2.2.2" data-mini-rdoc="ioncopy::call.CNA">call.CNA</a></code>.

calls

CNA calls are summarized to tables of all amplifications in each sample and to all amplifications in each amplicon/gene.

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Jan Budczies

ioncopy

Calling Copy Number Alterations in Amplicon Sequencing Data

summarize.CNA function

List of CNA calls generated by <code><a rd-options='' href='call.CNA'>call.CNA</a></code>.

summarize.CNA: Summary of CNA calls

Description

Usage

Arguments

Value