ips (version 0.0-7)

write.partitioned.nex: Write partitioned and commented NEXUS files

Description

This function takes one or more objects of class "DNAbin" and writes them to an interleaved NEXUS file.

Usage

write.partitioned.nex(..., file, labels)

Arguments

…

One or more objects of class "DNAbin"

file

character string giving a file name

labels

vector of mode "character"; used to label partitions; its length must match the number of gene partitions

See Also

write.nex, write.phy, write.fas

Examples

# NOT RUN {
# load sequence data and split in three parts
# -------------------------------------------
data(woodmouse)
w1 <- woodmouse[, 1:250]
w2 <- woodmouse[, 251:750]
w3 <- woodmouse[, 750:965]

# write nexus file with taxon block
# ---------------------------------
markers <- c("gene1", "gene2", "gene3")
write.partitioned.nex(w1, w2, w3, labels = markers)
# }