phylo2mafft

A phylogenetic tree of class <code><a rd-options="" href="/link/phylo?package=ips&version=0.0.11" data-mini-rdoc="ips::phylo">phylo</a></code>.

A character string giving a filename. May be missing, in which
case the results are only printed on the screen.

file

Converts a phylogenetic tree of class <code>"phylo"</code> to a format
 usable as a guide tree by MAFFT. This function is called internally by 
 <code><a rd-options="" href="/link/mafft?package=ips&version=0.0.11" data-mini-rdoc="ips::mafft">mafft</a></code>.

Functions that wrap popular phylogenetic software for sequence
alignment, masking of sequence alignments, and estimation of phylogenies and
ancestral character states.

Christoph Heibl

Interfaces to Phylogenetic Software in R

Natalie Cusimano

Franz-Sebastian Krah

phylo2mafft function

A phylogenetic tree of class <code><a rd-options='' href='phylo'>phylo</a></code>.

Converts a phylogenetic tree of class <code>"phylo"</code> to a format
 usable as a guide tree by MAFFT. This function is called internally by 
 <code><a rd-options='' href='mafft'>mafft</a></code>.

phylo2mafft: Convert Trees for MAFFT

Description

Usage

Arguments

Value

References

See Also