beastLog

A collection of parameter nodes used in the standard template of BEAST2.

internal

Functions that wrap popular phylogenetic software for sequence
alignment, masking of sequence alignments, and estimation of phylogenies and
ancestral character states.

Martin R. Smith

Interfaces to Phylogenetic Software in R

Christoph Heibl

Natalie Cusimano

Franz-Sebastian Krah

beastLog function

<dl><dt>l</dt>
<dd>A character string giving the name (i.e. <code>id</code> or <code>idref</code> attribute) of the desired parameter.</dd>
<dt>x</dt>
<dd>A list, internally generated by <code>rbeauti</code>.</dd>
<dt>i</dt>
<dd>Integer giving the index to a partition, internally generated by <code>rbeauti</code>.</dd></dl>

Arguments

XML Parameter Nodes — beastLog

<dl>

<dt>l</dt>
<dd>A character string giving the name (i.e. <code>id</code> or <code>idref</code> attribute) of the desired parameter.</dd>


<dt>x</dt>
<dd>A list, internally generated by <code>rbeauti</code>.</dd>


<dt>i</dt>
<dd>Integer giving the index to a partition, internally generated by <code>rbeauti</code>.</dd>

</dl>

beastLog: XML Parameter Nodes

Description

Usage

Value

Arguments