splitIntoClades

Takes a phylogeny and a subset of its tiplabels
and splits the list of tiplabels into monophyletic groups 
(clades).

Functions that wrap popular phylogenetic software for sequence
alignment, masking of sequence alignments, and estimation of phylogenies and
ancestral character states.

Martin R. Smith

Interfaces to Phylogenetic Software in R

Christoph Heibl

Natalie Cusimano

Franz-Sebastian Krah

splitIntoClades function

<dl><dt>phy</dt>
<dd>An object of class <code>phylo</code>.</dd>
<dt>tips</dt>
<dd>A vector of mode <code>"character"</code> containing any 
subset of the tiplabels in <code>phy</code>.</dd></dl>

Arguments

Find Monophyletic Subsets in Species Lists — splitIntoClades

<dl>

<dt>phy</dt>
<dd>An object of class <code>phylo</code>.</dd>


<dt>tips</dt>
<dd>A vector of mode <code>"character"</code> containing any 
subset of the tiplabels in <code>phy</code>.</dd>

</dl>

splitIntoClades: Find Monophyletic Subsets in Species Lists

Description

Usage

Value

Arguments