aperm.DNAbin

S3 method for <code><a href="/link/aperm?package=ips&version=0.1.1" data-mini-rdoc="ips::aperm">aperm</a></code> on objects of class
 <code>DNAbin</code>. Strips the class before permuting so that
 <code><a href="/link/apply?package=ips&version=0.1.1" data-mini-rdoc="ips::apply">apply</a></code> receives a plain raw matrix from the internal
 <code>aperm</code> call, matching the behaviour of <code>aperm.default</code> prior to
 R-devel revision 90136 (2026-06-12).

Functions that wrap popular phylogenetic software for sequence
alignment, masking of sequence alignments, and estimation of phylogenies and
ancestral character states.

Martin R. Smith

Interfaces to Phylogenetic Software in R

Christoph Heibl

Natalie Cusimano

Franz-Sebastian Krah

aperm.DNAbin function

<dl><dt>a</dt>
<dd>A matrix of class <code>DNAbin</code>.</dd>
<dt>perm</dt>
<dd>An integer vector giving the permutation of the dimensions.</dd>
<dt>resize</dt>
<dd>Logical; passed to <code>aperm.default</code>.</dd>
<dt>...</dt>
<dd>Further arguments passed to <code>aperm.default</code>.</dd></dl>

Arguments

S3 method for <code><a href='https://rdrr.io/r/base/aperm.html'>aperm</a></code> on objects of class
 <code>DNAbin</code>. Strips the class before permuting so that
 <code><a href='https://rdrr.io/r/base/apply.html'>apply</a></code> receives a plain raw matrix from the internal
 <code>aperm</code> call, matching the behaviour of <code>aperm.default</code> prior to
 R-devel revision 90136 (2026-06-12).

Array Transposition for DNAbin — aperm.DNAbin

<dl>

<dt>a</dt>
<dd>A matrix of class <code>DNAbin</code>.</dd>


<dt>perm</dt>
<dd>An integer vector giving the permutation of the dimensions.</dd>


<dt>resize</dt>
<dd>Logical; passed to <code>aperm.default</code>.</dd>


<dt>...</dt>
<dd>Further arguments passed to <code>aperm.default</code>.</dd>

</dl>

aperm.DNAbin: Array Transposition for DNAbin

Description

Usage

Value

Arguments