ips (version 0.1.1)

mrbayes.lset: MrBayes model settings

Description

Specify a model of DNA, Protein or trait evolution for mrbayes.

Usage

mrbayes.lset(
  nucmodel = "4by4",
  nst = 1,
  code = "universal",
  ploidy = "diploid",
  rates = "equal",
  ngammacat = 4,
  nlnormcat = 4,
  nmixtcat = 4,
  nbetacat = 5,
  omegavar = "equal",
  covarion = "no",
  coding = "all",
  parsmodel = "no",
  partition = 1
)

Value

A list of model parameters.

Arguments

nucmodel

A character string

nst

xxx

code

xxx

ploidy

xxx

rates

xxx

ngammacat

xxx

nlnormcat

xxx

nmixtcat

xxx

nbetacat

xxx

omegavar

xxx

covarion

xxx

coding

xxx

parsmodel

xxx

partition

A character string serving as an identifier in a multi-partition model.

Details

xxx

See Also

mrbayes, mrbayes.prset , mrbayes.mcmc.