ir (version 0.4.1)

ir_normalize: Normalizes infrared spectra in an ir object

Description

ir_normalize normalizes the intensity values of infrared spectra. Different methods for normalization are available.

Usage

ir_normalize(x, method = "area")
ir_normalise(x, method = "area")

Value

An object of class ir representing a normalized version of x.

Arguments

x

An object of class ir.

method

A character value specifying which normalization method to apply:

"zeroone"

All intensity values will be normalized to [0;1].

"area"

All intensity values will be divided by the sum of the intensity values at all wavenumber values of the spectrum.

"area_absolute"

All intensity values will be divided by the sum of the intensity values at all wavenumber values of the spectrum.

"vector"

All intensity values will be divided by the norm of the intensity vector (vector normalization).

"snv"

Standard Normal Variate correction: For each spectrum, the average intensity value is subtracted and then divided by the standard deviation.

A numeric value

If method is convertible to a numeric value, e.g. method = "980", the intensity of all spectra at a wavenumber value of 980 will be set to 1 and the minimum intensity value of each spectrum will be set to 0, i.e. the spectra will be normalized referring to a specific wavenumber value.

Examples

# with method = "area"
x1 <-
   ir::ir_sample_data |>
   ir::ir_normalize(method = "area")

# second derivative spectrum with method = "area" or method = "area_absolute"
x2 <-
   ir::ir_sample_data |>
   ir::ir_smooth(method = "sg", n = 31, m = 2) |>
   ir::ir_normalize(method = "area")

x3 <-
   ir::ir_sample_data |>
   ir::ir_smooth(method = "sg", n = 31, m = 2) |>
   ir::ir_normalize(method = "area_absolute")

# with method = "zeroone"
x4 <-
   ir::ir_sample_data |>
   ir::ir_normalize(method = "zeroone")

# with method = "vector"
x5 <-
   ir::ir_sample_data |>
   ir::ir_normalize(method = "vector")

# with method = "snv"
x6 <-
   ir::ir_sample_data |>
   ir::ir_normalize(method = "snv")

# normalizing to a specific peak
x7 <-
   ir::ir_sample_data |>
   ir::ir_normalize(method = 1090)