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isa2 (version 0.3.4)

The Iterative Signature Algorithm

Description

The ISA is a biclustering algorithm that finds modules in an input matrix. A module or bicluster is a block of the reordered input matrix.

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Install

install.packages('isa2')

Monthly Downloads

1,497

Version

0.3.4

License

CC BY-NC-SA 4.0

Issues

1

Pull Requests

0

Stars

6

Forks

5

Maintainer

Gabor Csardi

Last Published

April 8th, 2015

Functions in isa2 (0.3.4)

isa.in.silico

Generate in-silico input data for biclustering algorithms
generate.seeds

Generate seed vectors for the Iterative Signature Algorithm
ppa.in.silico

Generate in-silico input data for testing the PPA algorithm
isa.option

Options for the isa package
isa.iterate

The Iterative Signature Algorithm
robustness

Robustness of ISA biclusters and PPA co-modules
ppa.iterate

The Ping-Pong Algorithm
plotModules

Image plots of biclusters
isa.sweep

Create a hierarchical structure of ISA biclusters
ppa.unique

Filter co-modules that are very similar to each other
isa2-package

The isa package
isa.normalize

Normalize input data for use with ISA
ppa.normalize

Normalize input data for use with the PPA
isa

Iterative Signature Algorithm
isa.biclust

Convert ISA modules to a Biclust class, as defined by the biclust package
isa.unique

Filter out biclusters that are very similar to each other
ppa

The Ping-Pong Algorithm