isa2 v0.3.4
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by Gabor Csardi
The Iterative Signature Algorithm
The ISA is a biclustering algorithm that finds modules
in an input matrix. A module or bicluster is a block of the
reordered input matrix.
Functions in isa2
| Name | Description | |
| isa.in.silico | Generate in-silico input data for biclustering algorithms | |
| generate.seeds | Generate seed vectors for the Iterative Signature Algorithm | |
| ppa.in.silico | Generate in-silico input data for testing the PPA algorithm | |
| isa.option | Options for the isa package | |
| isa.iterate | The Iterative Signature Algorithm | |
| robustness | Robustness of ISA biclusters and PPA co-modules | |
| ppa.iterate | The Ping-Pong Algorithm | |
| plotModules | Image plots of biclusters | |
| isa.sweep | Create a hierarchical structure of ISA biclusters | |
| ppa.unique | Filter co-modules that are very similar to each other | |
| isa2-package | The isa package | |
| isa.normalize | Normalize input data for use with ISA | |
| ppa.normalize | Normalize input data for use with the PPA | |
| isa | Iterative Signature Algorithm | |
| isa.biclust | Convert ISA modules to a Biclust class, as defined by the biclust package | |
| isa.unique | Filter out biclusters that are very similar to each other | |
| ppa | The Ping-Pong Algorithm | |
| No Results! | ||
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Details
| License | CC BY-NC-SA 4.0 |
| Packaged | 2015-04-08 21:15:11 UTC; gaborcsardi |
| URL | https://github.com/gaborcsardi/ISA |
| BugReports | https://github.com/gaborcsardi/ISA/issues |
| NeedsCompilation | yes |
| Repository | CRAN |
| Date/Publication | 2015-04-09 01:05:31 |
| suggests | biclust , igraph (>= 0.5.5) |
| imports | lattice |
| depends | methods |
| Contributors | Gabor Csardi |
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