# isa2 v0.3.4

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## The Iterative Signature Algorithm

The ISA is a biclustering algorithm that finds modules in an input matrix. A module or bicluster is a block of the reordered input matrix.

## Functions in isa2

 Name Description isa.in.silico Generate in-silico input data for biclustering algorithms generate.seeds Generate seed vectors for the Iterative Signature Algorithm ppa.in.silico Generate in-silico input data for testing the PPA algorithm isa.option Options for the isa package isa.iterate The Iterative Signature Algorithm robustness Robustness of ISA biclusters and PPA co-modules ppa.iterate The Ping-Pong Algorithm plotModules Image plots of biclusters isa.sweep Create a hierarchical structure of ISA biclusters ppa.unique Filter co-modules that are very similar to each other isa2-package The isa package isa.normalize Normalize input data for use with ISA ppa.normalize Normalize input data for use with the PPA isa Iterative Signature Algorithm isa.biclust Convert ISA modules to a Biclust class, as defined by the biclust package isa.unique Filter out biclusters that are very similar to each other ppa The Ping-Pong Algorithm No Results!