island v0.2.4

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Stochastic Island Biogeography Theory Made Easy

Tools to develop stochastic models based on the Theory of Island Biogeography (TIB) of MacArthur and Wilson (1967) <DOI:10.1023/A:1016393430551> and extensions. The package implements methods to estimate colonization and extinction rates (including environmental variables) given presence-absence data, simulate community assembly, and perform model selection.

Functions in island

Name Description
irregular_single_dataset c/e rates for irregular samplings in a dataset
alonso15 Lakshadweep Archipelago coral fish community reassembly
cetotrans From rates to probabilities
akaikeic Akaike Information Criterion
r_squared Model prediction error
ibd_models Inmigration, birth, death- models
data_generation Data simulation of colonization-extinction dynamics
mss_cedp Likelihood approach for esitmating colonization/extinction with perfect or imperfect detectability
all_environmental_fit Environmental fit for a single dataset
idaho Mapped plant community time series, Dubois, ID
irregular_multiple_datasets c/e rates for irregular samplings in multiple datasets
weight_of_evidence Weight of evidence
upgma_model_selection Model selection function based on a upgma grouping algorithm
lakshadweep Lakshadweep Archipelago coral fish community reassembly data (expanded)
lakshadweepPLUS Lakshadweep Archipelago coral fish community reassembly data in a single data frame
island island: Stochastic Island Biogeography Theory Made Easy
rates_calculator Colonization and extinction rates calculator for expressions.
regular_sampling_scheme c/e rates for a regular sampling scheme
simberloff Simberloff and Wilson original defaunation experiment data
sss_cedp MacKenzie etal (2003) likelihood approach for estimating colonization/extinction parameters (with impecfect detectability)
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Vignettes of island

Name
IBDmodels.Rmd
detectability.Rmd
island.Rmd
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Details

Type Package
Date 2019-04-15
NeedsCompilation yes
License GPL-3
LazyData TRUE
RoxygenNote 6.1.1.9000
VignetteBuilder knitr
Packaged 2019-04-15 18:17:12 UTC; vicente
Repository CRAN
Date/Publication 2019-04-15 21:22:40 UTC

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