island v0.2.4
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Stochastic Island Biogeography Theory Made Easy
Tools to develop stochastic models based on the Theory of Island
Biogeography (TIB) of MacArthur and Wilson (1967) <DOI:10.1023/A:1016393430551>
and extensions. The package implements methods to estimate colonization and
extinction rates (including environmental variables) given presence-absence
data, simulate community assembly, and perform model selection.
Functions in island
| Name | Description | |
| irregular_single_dataset | c/e rates for irregular samplings in a dataset | |
| alonso15 | Lakshadweep Archipelago coral fish community reassembly | |
| cetotrans | From rates to probabilities | |
| akaikeic | Akaike Information Criterion | |
| r_squared | Model prediction error | |
| ibd_models | Inmigration, birth, death- models | |
| data_generation | Data simulation of colonization-extinction dynamics | |
| mss_cedp | Likelihood approach for esitmating colonization/extinction with perfect or imperfect detectability | |
| all_environmental_fit | Environmental fit for a single dataset | |
| idaho | Mapped plant community time series, Dubois, ID | |
| irregular_multiple_datasets | c/e rates for irregular samplings in multiple datasets | |
| weight_of_evidence | Weight of evidence | |
| upgma_model_selection | Model selection function based on a upgma grouping algorithm | |
| lakshadweep | Lakshadweep Archipelago coral fish community reassembly data (expanded) | |
| lakshadweepPLUS | Lakshadweep Archipelago coral fish community reassembly data in a single data frame | |
| island | island: Stochastic Island Biogeography Theory Made Easy | |
| rates_calculator | Colonization and extinction rates calculator for expressions. | |
| regular_sampling_scheme | c/e rates for a regular sampling scheme | |
| simberloff | Simberloff and Wilson original defaunation experiment data | |
| sss_cedp | MacKenzie etal (2003) likelihood approach for estimating colonization/extinction parameters (with impecfect detectability) | |
| No Results! | ||
Vignettes of island
| Name | ||
| IBDmodels.Rmd | ||
| detectability.Rmd | ||
| island.Rmd | ||
| No Results! | ||
Last month downloads
Details
| Type | Package |
| Date | 2019-04-15 |
| NeedsCompilation | yes |
| License | GPL-3 |
| LazyData | TRUE |
| RoxygenNote | 6.1.1.9000 |
| VignetteBuilder | knitr |
| Packaged | 2019-04-15 18:17:12 UTC; vicente |
| Repository | CRAN |
| Date/Publication | 2019-04-15 21:22:40 UTC |
| suggests | knitr , rmarkdown , rootSolve , testthat |
| depends | R (>= 3.0.0) , stats , utils |
| Contributors | David Alonso |
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