This is an R package to draw ISOtonic inference for CIRcular data.
Author(s): Sandra Barragán mainly based on the SAS code written by Miguel A. Fernández. Maintainer: <sandra.barragan@gmail.com>
| Package: | isocir |
| Version: | 2.0 |
| Depends: | combinat, circular |
| License: | GPL (>=3) |
Mardia, K. and Jupp, P. (2000). Directional Statistics, Chichester: Wiley.
Barragan, S., Fernandez, M.A., Rueda, C. and Peddada, S.D. (2015). isocir: An R Package for Constrained Inference Using Isotonic Regression for Circular Data, with an Application to Cell Biology. Journal of Statistical Software, 54, n1: pp 1--17. doi: 10.18637/jss.v054.i04.
Rueda, C., Fernandez, M. A. and Peddada, S. D. (2009). Estimation of parameters subject to order restrictions on a circle with application to estimation of phase angles of cell-cycle genes. Journal of the American Statistical Association, 104, n485; pp 338--347. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2742472/
Fernandez, M. A., Rueda, C. and Peddada, S. D. (2012). Identification of a core set of signature cell cycle genes whose relative order of time to peak expression is conserved across species, Nucl. Acids Res. 40, n7: pp 2823--2832. doi:10.1093/nar/gkr1077. https://academic.oup.com/nar/article/40/7/2823/1183140
Barragan, S., Rueda, C., Fernandez, M.A. and Peddada, S.D. (2015). Determination of Temporal Order among the Components of an Oscillatory System. PLOS ONE. 10, n7: pp 1--14. doi: 10.1371/journal.pone.0124842. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495067/
CIRE, sce, cond.test, mrl, datareplic, cirdata, cirgenes.