itol.hub-class

itol.hub

The itol.hub object is an intermediate storage container used internally throughout the
integration procedure to hold bits of data that are useful downstream.

The 'Interactive Tree Of Life' <https://itol.embl.de/> online server can
edit and annotate trees interactively. The 'itol.toolkit' package can
support all types of annotation templates.

Tong Zhou

itol.toolkit

Helper Functions for 'Interactive Tree Of Life'

itol.hub-class function

<dl>
<dt><code>tree</code></dt>
<dd>a list of meta data table, usually raw, full, and analyze</dd></dl>
<dt><code>seq</code></dt>
<dd>identity of the active assay</dd>
<dt><code>abundance</code></dt>
<dd>abundance</dd>
<dt><code>taxonomy</code></dt>
<dd>taxonomy</dd>
<dt><code>meta.data</code></dt>
<dd>other meta.data</dd>
<dt><code>theme</code></dt>
<dd>itol theme</dd>

Slots

The itol.hub Class — itol.hub-class

<dl>
<dt><code>tree</code></dt>
<dd>a list of meta data table, usually raw, full, and analyze</dd>


<dt><code>seq</code></dt>
<dd>identity of the active assay</dd>


<dt><code>abundance</code></dt>
<dd>abundance</dd>


<dt><code>taxonomy</code></dt>
<dd>taxonomy</dd>


<dt><code>meta.data</code></dt>
<dd>other meta.data</dd>


<dt><code>theme</code></dt>
<dd>itol theme</dd>


</dl>

itol.hub-class: The itol.hub Class

Description

Arguments

Slots