itol.theme-class

itol.theme

The itol.theme object is an intermediate storage container used internally throughout the
integration procedure to hold bits of data that are useful downstream.

The 'Interactive Tree Of Life' <https://itol.embl.de/> online server can
edit and annotate trees interactively. The 'itol.toolkit' package can
support all types of annotation templates.

Tong Zhou

itol.toolkit

Helper Functions for 'Interactive Tree Of Life'

itol.theme-class function

<dl>
<dt><code>type</code></dt>
<dd>a list of meta data table, usually raw, full, and analyze</dd></dl>
<dt><code>sep</code></dt>
<dd>identity of the active assay</dd>
<dt><code>profile</code></dt>
<dd>abundance</dd>
<dt><code>field</code></dt>
<dd>taxonomy</dd>
<dt><code>common_themes</code></dt>
<dd>other meta.data</dd>
<dt><code>specific_themes</code></dt>
<dd>itol theme</dd>

Slots

The itol.theme Class — itol.theme-class

<dl>
<dt><code>type</code></dt>
<dd>a list of meta data table, usually raw, full, and analyze</dd>


<dt><code>sep</code></dt>
<dd>identity of the active assay</dd>


<dt><code>profile</code></dt>
<dd>abundance</dd>


<dt><code>field</code></dt>
<dd>taxonomy</dd>


<dt><code>common_themes</code></dt>
<dd>other meta.data</dd>


<dt><code>specific_themes</code></dt>
<dd>itol theme</dd>


</dl>

itol.theme-class: The itol.theme Class

Description

Arguments

Slots