itol.toolkit (version 1.1.7)

learn_profile: Learn profile

Description

learn profile paramters as list

Usage

learn_profile(lines, sep)

Value

a list of profile parameters containing

name

a character specifying label, which is used in the legend table

color

dataset color in the legend (use hexadecimal, RGB or RGBA notation; if using RGB/RGBA, COMMA cannot be used as SEPARATOR)

Arguments

lines

a vector of character strings from template file.

sep

a character specifying the separator.

Examples

tree <- system.file("extdata",
                    "tree_of_itol_templates.tree",
                    package = "itol.toolkit")
df_frequence <- data.table::fread(system.file("extdata",
                                              "templates_frequence.txt",
                                              package = "itol.toolkit"))
## create unit
unit <- create_unit(data = df_frequence,
                    key = "Quickstart",
                    type = "DATASET_HEATMAP",
                    tree = tree)
## write unit
file <- tempfile()
write_unit(unit,file)
## Learn legend parameters
lines <- line_clean(file=file)
sep = learn_separator(file = file)
learn_profile(lines = lines, sep = sep)