check_neff

Returns the mean number of <code>n.eff</code> values (by each parameter) that are greater than a specified threshold criterion.
<code>n.eff</code> is calculated within 'JAGS', and may be interpreted as a crude measure of
effective sample size for a given parameter node.

Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.

Matt Tyers

jagshelper

Extracting and Visualizing Output from 'jagsUI'

check_neff function

<dl><dt>x</dt>
<dd>Output object from <code>jagsUI::jags()</code></dd>
<dt>thresh</dt>
<dd>Threshold value (defaults to 500)</dd></dl>

Arguments

Author

Quick summary of n.eff values by parameter name — check_neff

<dl>

<dt>x</dt>
<dd>Output object from <code>jagsUI::jags()</code></dd>


<dt>thresh</dt>
<dd>Threshold value (defaults to 500)</dd>

</dl>

check_neff: Quick summary of n.eff values by parameter name

Description

Usage

Value

Arguments

Author

See Also

Examples