cor_jags

Computes a correlation matrix of all MCMC samples from an object
returned by 'jagsUI', or an optional subset of parameter nodes.

Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.

Matt Tyers

jagshelper

Extracting and Visualizing Output from 'jagsUI'

cor_jags function

<dl><dt>x</dt>
<dd>Output object returned from <code>jagsUI</code></dd>
<dt>p</dt>
<dd>Optional string to begin posterior names. If <code>NULL</code> is used, all parameters will be used</dd>
<dt>exact</dt>
<dd>Whether name must be an exact match (<code>TRUE</code>) or with initial sub-string matching only supplied characters (<code>FALSE</code>).
Defaults to <code>FALSE.</code></dd></dl>

Arguments

Author

Correlation matrix from a JAGS object — cor_jags

<dl>

<dt>x</dt>
<dd>Output object returned from <code>jagsUI</code></dd>


<dt>p</dt>
<dd>Optional string to begin posterior names. If <code>NULL</code> is used, all parameters will be used</dd>


<dt>exact</dt>
<dd>Whether name must be an exact match (<code>TRUE</code>) or with initial sub-string matching only supplied characters (<code>FALSE</code>).
Defaults to <code>FALSE.</code></dd>

</dl>

cor_jags: Correlation matrix from a JAGS object

Description

Usage

Value

Arguments

Author

See Also

Examples