jags_plist

Extracts a list of matrices, one for each saved parameter node. Each
list element will be all posterior samples from that parameter node, arranged in
a matrix with a column associated with each MCMC chain and a row for
each MCMC iteration.

Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.

Matt Tyers

jagshelper

Extracting and Visualizing Output from 'jagsUI'

jags_plist function

<dl><dt>x</dt>
<dd><code>jagsUI</code> output object</dd>
<dt>p</dt>
<dd>String to subset parameter names, if a subset is desired</dd>
<dt>exact</dt>
<dd>Whether <code>p</code> should be an exact match (<code>TRUE</code>) or just match the
beginning of the string (<code>FALSE</code>). Defaults to <code>FALSE</code>.</dd></dl>

Arguments

Author

Plist — jags_plist

<dl>

<dt>x</dt>
<dd><code>jagsUI</code> output object</dd>


<dt>p</dt>
<dd>String to subset parameter names, if a subset is desired</dd>


<dt>exact</dt>
<dd>Whether <code>p</code> should be an exact match (<code>TRUE</code>) or just match the
beginning of the string (<code>FALSE</code>). Defaults to <code>FALSE</code>.</dd>

</dl>

jags_plist: Plist

Description

Usage

Value

Arguments

Author

Examples