plot.bcmixmeta: Generic plot function for bcmixmeta object.

Description

This function is built with `ggplot2`. Parameters such as `binwidth`, `adjust`, `density.color`, `density.lwd`, and `density.lty` correspond directly to arguments in the `ggplot2` geoms.

Usage

# S3 method for bcmixmeta
plot(
  x,
  plot.type = "predictive_with_bias",
  n.samples = NULL,
  x.lim = NULL,
  y.lim = NULL,
  x.lab = NULL,
  y.lab = "Posterior Predictive Distribution",
  title.plot = NULL,
  show.histogram = TRUE,
  show.rug = TRUE,
  show.legend = FALSE,
  binwidth = 0.08,
  adjust = 1,
  predictive.color = "blue",
  mu.color = "black",
  bias.color = "red",
  hist.color = "black",
  hist.fill = "grey95",
  rug.color = "green",
  rug.alpha = 1,
  density.alpha = 0.4,
  density.lwd = 1,
  density.lty = 1,
  ...
)

Arguments

x: The object generated by the bcmixmeta function (the BC-BNP model output).
plot.type: A character string specifying the type of plot: "predictive_with_bias" (default), "predictive", "mu_posterior", "tau_posterior".
n.samples: The number of posterior samples to plot. If NULL, all posterior samples are used.
x.lim: Numeric vector of length 2 specifying the x-axis limits.
y.lim: Numeric vector of length 2 specifying the y-axis limits.
x.lab: Text with the label of the x-axis.
y.lab: Text with the label of the y-axis.
title.plot: Text for setting a title in the plot.
show.histogram: A logical value indicating whether to show the histogram.
show.rug: A logical value indicating whether to show the rug plot.
show.legend: A logical value indicating whether to display the legend.
binwidth: A numeric value specifying the bin width for the histogram.
adjust: A numeric value to adjust the bandwidth of the density curves.
predictive.color: A character value specifying the color of the posterior predictive density curve.
mu.color: A character value specifying the color of the posterior mean density curve.
bias.color: A character value specifying the color of the bias-adjusted mean density curve.
hist.color: A character value for the histogram border color.
hist.fill: A character value for the histogram fill color.
rug.color: A character value for the rug plot color.
rug.alpha: A numeric value between 0 and 1 specifying the rug plot transparency.
density.alpha: A numeric value between 0 and 1 specifying density transparency.
density.lwd: A numeric value specifying density line width.
density.lty: A numeric value specifying density line type.
...: ...