select_patients

Given a list of tables, filter them by patient.

Generates interactive Jellyfish plots to visualize spatiotemporal tumor
evolution by integrating sample and phylogenetic trees into a unified plot.
This approach provides an intuitive way to analyze tumor heterogeneity and
evolution over time and across anatomical locations. The Jellyfish plot
visualization design was first introduced by Lahtinen, Lavikka, et al.
(2023, <doi:10.1016/j.ccell.2023.04.017>).
This package also supports visualizing ClonEvol results, a tool developed
by Dang, et al. (2017, <doi:10.1093/annonc/mdx517>), for analyzing clonal
evolution from multi-sample sequencing data. The 'clonevol' package is not
available on CRAN but can be installed from its GitHub
repository (<https://github.com/hdng/clonevol>).

Kari Lavikka

jellyfisher

Visualize Spatiotemporal Tumor Evolution with Jellyfish Plots

select_patients function

<dl><dt>tables</dt>
<dd>A list of tables (samples, phylogeny, compositions, ranks)</dd>
<dt>patient</dt>
<dd>The patient or patients to filter by</dd></dl>

Arguments

Filter Jellyfish tables by patient — select_patients

<dl>

<dt>tables</dt>
<dd>A list of tables (samples, phylogeny, compositions, ranks)</dd>


<dt>patient</dt>
<dd>The patient or patients to filter by</dd>

</dl>

select_patients: Filter Jellyfish tables by patient

Description

Usage

Value

Arguments

Examples