AddSickleJrMetadata

Add any type of metadata to an object of class SickleJr. Metadata
are stored in list format under the name specified in <code>metadataname</code> of each node in slot <code>metadata</code>.

Methods to perform Joint graph Regularized Single-Cell Kullback-Leibler Sparse Non-negative Matrix Factorization ('jrSiCKLSNMF', pronounced "junior sickles NMF") on quality controlled single-cell multimodal omics count data. 'jrSiCKLSNMF' specifically deals with dual-assay scRNA-seq and scATAC-seq data. This package contains functions to extract meaningful latent factors that are shared across omics modalities. These factors enable accurate cell-type clustering and facilitate visualizations. Methods for pre-processing, clustering, and mini-batch updates and other adaptations for larger datasets are also included. For further details on the methods used in this package please see Ellis, Roy, and Datta (2023) <doi:10.3389/fgene.2023.1179439>.

Dorothy Ellis

jrSiCKLSNMF

Multimodal Single-Cell Omics Dimensionality Reduction

Susmita Datta

Kenneth Perkins

Renaud Gaujoux

AddSickleJrMetadata function

<dl><dt>SickleJr</dt>
<dd>An object of class SickleJr holding at least one count matrix of omics data</dd>
<dt>metadata</dt>
<dd>Metadata to add to the SickleJr object; there are no restrictions on type</dd>
<dt>metadataname</dt>
<dd>A string input that indicates the desired name for the added
metadata.</dd></dl>

Arguments

Add metadata to an object of class SickleJr — AddSickleJrMetadata

<dl>

<dt>SickleJr</dt>
<dd>An object of class SickleJr holding at least one count matrix of omics data</dd>


<dt>metadata</dt>
<dd>Metadata to add to the SickleJr object; there are no restrictions on type</dd>


<dt>metadataname</dt>
<dd>A string input that indicates the desired name for the added
metadata.</dd>

</dl>

AddSickleJrMetadata: Add metadata to an object of class SickleJr

Description

Usage

Value

Arguments

Examples