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jrich (version 0.60-35)

Jack-Knife Support for Evolutionary Distinctiveness Indices I and W

Description

These functions calculate the taxonomic measures presented in Miranda-Esquivel (2016). The package introduces Jack-knife resampling in evolutionary distinctiveness prioritization analysis, as a way to evaluate the support of the ranking in area prioritization, and the persistence of a given area in a conservation analysis. The algorithm is described in: Miranda-Esquivel, D (2016) .

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Install

install.packages('jrich')

Monthly Downloads

157

Version

0.60-35

License

GPL-3

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Maintainer

Daniel R MirandaEsquivel

Last Published

March 6th, 2016

Functions in jrich (0.60-35)

Multi.Index.Calc

Jack-knife indices in n topologies one time.
Read.Data

Read distributions.
distribution

Distribution of five taxa.
Sum.Indices.2.Topologies

Sums two tables with indices values.
Multi.Jack

Jack-knife indices in n topologies m times.
Calculate.Index

Indices values and Jack-knife indices for a single topology.
taxon1

A tree and the distribution of the taxa.
Multitaxon1

Multitaxon example.
IndexI

I index value for a single topology.
IndexW

W index value for a single topology.
Children

Children of a node.
tree

A tree with five terminals.
Best.Index

Jack-knife indices in a single topology m times and evaluates a success rule.
Rank.Indices

Rank indices.