calculate_mat

Function that calculates the maximum time after hybridization
after which the number of junctions can still be reliably used to estimate
the onset of hybridization. This is following equation 15 in
Janzen et al. 2018.

time

error

analytic

Individual based simulations of hybridizing populations,
where the accumulation of junctions is tracked. Furthermore,
mathematical equations are provided to verify simulation outcomes.
Both simulations and mathematical equations are based on Janzen
(2018, <doi:10.1101/058107>) and Janzen (2020,
<doi:10.1101/2020.09.10.292441>).

Thijs Janzen

junctions

The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

calculate_mat function

<dl><dt>N</dt>
<dd>Population Size</dd>
<dt>R</dt>
<dd>Number of genetic markers</dd>
<dt>H_0</dt>
<dd>Frequency of heterozygosity at t = 0</dd>
<dt>C</dt>
<dd>Mean number of crossovers per meiosis (e.g. size in Morgan of
the chromosome)</dd></dl>

Arguments

Function to calculate the maximum accurate time — calculate_mat

<dl>

<dt>N</dt>
<dd>Population Size</dd>


<dt>R</dt>
<dd>Number of genetic markers</dd>


<dt>H_0</dt>
<dd>Frequency of heterozygosity at t = 0</dd>


<dt>C</dt>
<dd>Mean number of crossovers per meiosis (e.g. size in Morgan of
the chromosome)</dd>

</dl>

calculate_mat: Function to calculate the maximum accurate time

Description

Usage

Value

Arguments

Examples