time_error

Calculate the error in the estimate of the onset of
hybridization, following Equations 3 &amp; 4 in the Supplementary information of
Janzen et al. 2018.

Individual based simulations of hybridizing populations,
where the accumulation of junctions is tracked. Furthermore,
mathematical equations are provided to verify simulation outcomes.
Both simulations and mathematical equations are based on Janzen
(2018, <doi:10.1101/058107>) and Janzen (2020,
<doi:10.1101/2020.09.10.292441>).

Thijs Janzen

junctions

The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

time_error function

<dl><dt>t</dt>
<dd>Inferred time</dd>
<dt>N</dt>
<dd>Population Size</dd>
<dt>R</dt>
<dd>Number of genetic markers</dd>
<dt>H_0</dt>
<dd>Frequency of heterozygosity at t = 0</dd>
<dt>C</dt>
<dd>Mean number of crossovers per meiosis (e.g. size in Morgan of
the chromosome)</dd>
<dt>relative</dt>
<dd>Boolean flag, if TRUE: return the relative error, if FALSE:
return error in generations</dd></dl>

Arguments

Estimate the error in the time estimate — time_error

<dl>

<dt>t</dt>
<dd>Inferred time</dd>


<dt>N</dt>
<dd>Population Size</dd>


<dt>R</dt>
<dd>Number of genetic markers</dd>


<dt>H_0</dt>
<dd>Frequency of heterozygosity at t = 0</dd>


<dt>C</dt>
<dd>Mean number of crossovers per meiosis (e.g. size in Morgan of
the chromosome)</dd>


<dt>relative</dt>
<dd>Boolean flag, if TRUE: return the relative error, if FALSE:
return error in generations</dd>

</dl>

time_error: Estimate the error in the time estimate

Description

Usage

Value

Arguments