Estimate the time since the onset of hybridization, for a haploid genome
estimate_time_haploid(
ancestry_matrix,
N = 1000,
freq_ancestor_1 = 0.5,
lower_lim = 2,
upper_lim = 1000,
verbose = FALSE
)The number of generations passed since the onset of hybridization
matrix with 3 columns, column 1 = chromosome, column 2 = location in Morgan, column 3 = ancestry.
Population Size
Frequency of ancestor 1 at t = 0
lower limit of the optimization algorithm. Increase if the expected admixture time is relatively ancient
upper limit of the optimization algorithm. If set too large, recent admixture events can be overlooked - best to set as low as possible.
return verbose output