number_of_junctions_backcross

Calculate the expected number of junctions after t
generations, in a backcrossing mating scheme.

Individual based simulations of hybridizing populations,
where the accumulation of junctions is tracked. Furthermore,
mathematical equations are provided to verify simulation outcomes.
Both simulations and mathematical equations are based on Janzen
(2018, <doi:10.1101/058107>) and Janzen (2022,
<doi:10.1111/1755-0998.13519>).

Thijs Janzen

junctions

The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

number_of_junctions_backcross function

<dl><dt>H_0</dt>
<dd>Frequency of heterozygosity at t = 0</dd>
<dt>C</dt>
<dd>Mean number of crossovers per meiosis (e.g. size in Morgan of the
chromosome)</dd>
<dt>t</dt>
<dd>Time since admixture</dd></dl>

Arguments

Calculate the average number of junctions during backcrossing — number_of_junctions_backcross

<dl>

<dt>H_0</dt>
<dd>Frequency of heterozygosity at t = 0</dd>


<dt>C</dt>
<dd>Mean number of crossovers per meiosis (e.g. size in Morgan of the
chromosome)</dd>


<dt>t</dt>
<dd>Time since admixture</dd>

</dl>

number_of_junctions_backcross: Calculate the average number of junctions during backcrossing

Description

Usage

Value

Arguments

Examples