gwas

An object of type GWASdata containing the example files for 
annotation, phenotypes and genotypes.

datasets

Methods to extract information on pathways, genes and SNPs from
online databases. It provides functions for data preparation and evaluation
of genetic influence on a binary outcome using the logistic kernel machine
test (LKMT). Three different kernel functions are offered to analyze genotype
information in this variance component test: A linear kernel, a size-adjusted
kernel and a network based kernel.

Juliane Manitz

kangar00

Kernel Approaches for Nonlinear Genetic Association Regression

gwas function

An object of class <code><a rd-options="" href="/link/GWASdata?package=kangar00&version=1.1" data-mini-rdoc="kangar00::GWASdata">GWASdata</a></code>:<dl class="dl-horizontal">
 <dt>geno</dt><dd>contains example genotypes</dd>
 <dt>anno</dt><dd>example annotation for three pathways</dd>
 <dt>pheno</dt><dd>exemplary phenotypes for all 'genotyped' individuals</dd>
 <dt>desc</dt><dd>a description of the GWAS study, here 'example study'</dd>
</dl>

Format

Example <code><a rd-options='' href='GWASdata'>GWASdata</a></code> object. — gwas

An object of class <code><a rd-options='' href='GWASdata'>GWASdata</a></code>:<dl class='dl-horizontal'>
 <dt>geno</dt><dd>contains example genotypes</dd>
 <dt>anno</dt><dd>example annotation for three pathways</dd>
 <dt>pheno</dt><dd>exemplary phenotypes for all 'genotyped' individuals</dd>
 <dt>desc</dt><dd>a description of the GWAS study, here 'example study'</dd>
</dl>

gwas: Example `GWASdata` object.

Description

Usage

Arguments

Format