net.kernel.hsa04020

datasets

Methods to extract information on pathways, genes and SNPs from
online databases. It provides functions for data preparation and evaluation
of genetic influence on a binary outcome using the logistic kernel machine
test (LKMT). Three different kernel functions are offered to analyze genotype
information in this variance component test: A linear kernel, a size-adjusted
kernel and a network based kernel.

Juliane Manitz

kangar00

Kernel Approaches for Nonlinear Genetic Association Regression

net.kernel.hsa04020 function

An object of class <code><a rd-options="" href="/link/kernel?package=kangar00&version=1.1" data-mini-rdoc="kangar00::kernel">kernel</a></code> and type 'network' for the pathway 
hsa04020.<dl class="dl-horizontal">
 <dt>type</dt><dd>specifies which kernel function was used to calculate the kernel</dd>
<dt>kernel</dt><dd>includes the kernel matrix calculated for the pathway</dd>
<dt>pathway</dt><dd>includes the <code><a rd-options="" href="/link/pathway?package=kangar00&version=1.1" data-mini-rdoc="kangar00::pathway">pathway</a></code> object of the pathway, for which 
the kernel matrix was calculated</dd>
</dl>

Format

Example network-based kernel matrix for pathway hsa04020. — net.kernel.hsa04020

An object of class <code><a rd-options='' href='kernel'>kernel</a></code> and type 'network' for the pathway 
hsa04020.<dl class='dl-horizontal'>
 <dt>type</dt><dd>specifies which kernel function was used to calculate the kernel</dd>
<dt>kernel</dt><dd>includes the kernel matrix calculated for the pathway</dd>
<dt>pathway</dt><dd>includes the <code><a rd-options='' href='pathway'>pathway</a></code> object of the pathway, for which 
the kernel matrix was calculated</dd>
</dl>

net.kernel.hsa04020: Example network-based kernel matrix for pathway hsa04020.

Description

Usage

Arguments

Format