kangar00 (version 1.1)

rewire_network: Rewires interactions in a pathway, which go through a gene not represented by any SNPs in the considered GWASdata dataset.

Description

Rewires interactions in a pathway, which go through a gene not represented by any SNPs in the considered GWASdata dataset.

Usage

# S4 method for pathway
rewire_network(object, x)

Arguments

object

pathway object which's network matrix will be rewired

x

A vector of gene names, indicating which genes are not represented by SNPs in the considered GWASdata object and will be removed

Value

A pathway object including the rewired network matrix

Examples

# NOT RUN {
data(hsa04020)
rewire_network(hsa04020, c("PHKB", "ORAI2"))
# }