hsa04020

An object of class <code><a rd-options="" href="/link/pathway?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway">pathway</a></code> for the pathway with KEGG 
identifier hsa04020.

datasets

Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel (Friedrichs et al., 2017, <doi:10.1155/2017/6742763>).

Juliane Manitz

kangar00

Kernel Approaches for Nonlinear Genetic Association Regression

hsa04020 function

A <code><a rd-options="" href="/link/pathway?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway">pathway</a></code> object including 180 genes.<dl class="dl-horizontal">
 <dt>id</dt><dd>KEGG identifier of the example pathways</dd>
 <dt>adj</dt><dd>gives the quadratic adjacency <code>matrix</code> for the pathway and with 
that the network topology. Matrix dimensions equal the number of genes in the 
pathway</dd>
 <dt>sign</dt><dd>includes a <code>vector</code> of signs to distinguish activations and 
inhibitions in the adjacency <code>matrix</code></dd>
</dl>

Format

An object of class <code><a rd-options='' href='pathway'>pathway</a></code> for the pathway with KEGG 
identifier hsa04020.

Example <code><a rd-options='' href='pathway'>pathway</a></code> object for pathway hsa04020. — hsa04020

A <code><a rd-options='' href='pathway'>pathway</a></code> object including 180 genes.<dl class='dl-horizontal'>
 <dt>id</dt><dd>KEGG identifier of the example pathways</dd>
 <dt>adj</dt><dd>gives the quadratic adjacency <code>matrix</code> for the pathway and with 
that the network topology. Matrix dimensions equal the number of genes in the 
pathway</dd>
 <dt>sign</dt><dd>includes a <code>vector</code> of signs to distinguish activations and 
inhibitions in the adjacency <code>matrix</code></dd>
</dl>

Example <code><a rd-options='' href='pathway'>pathway</a></code> object for pathway hsa04020.

Example <code><a rd-options="" href="/link/pathway?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway">pathway</a></code> object for pathway hsa04020.

hsa04020: Example `pathway` object for pathway hsa04020.

Description

Usage

Arguments

Format