hsa04022_info

An object of class <code><a rd-options="" href="/link/pathway_info?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway_info">pathway_info</a></code> for the <code><a rd-options="" href="/link/pathway?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway">pathway</a></code>
with KEGG identifier hsa04020.

datasets

Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel (Friedrichs et al., 2017, <doi:10.1155/2017/6742763>).

Juliane Manitz

kangar00

Kernel Approaches for Nonlinear Genetic Association Regression

hsa04022_info function

A <code><a rd-options="" href="/link/pathway_info?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway_info">pathway_info</a></code> object including information on 163 genes.<dl class="dl-horizontal">
 <dt>info</dt><dd>a <code>data frame</code> including information on genes included in 
pathway. Has columns 'pathway', 'gene_start', 'gene_end', 'chr', and 'gene'</dd>
</dl>

Format

An object of class <code><a rd-options='' href='pathway_info'>pathway_info</a></code> for the <code><a rd-options='' href='pathway'>pathway</a></code>
with KEGG identifier hsa04020.

Example <code><a rd-options='' href='pathway_info'>pathway_info</a></code> object for <code><a rd-options='' href='pathway'>pathway</a></code> hsa04022. — hsa04022_info

A <code><a rd-options='' href='pathway_info'>pathway_info</a></code> object including information on 163 genes.<dl class='dl-horizontal'>
 <dt>info</dt><dd>a <code>data frame</code> including information on genes included in 
pathway. Has columns 'pathway', 'gene_start', 'gene_end', 'chr', and 'gene'</dd>
</dl>

Example <code><a rd-options='' href='pathway_info'>pathway_info</a></code> object for <code><a rd-options='' href='pathway'>pathway</a></code> hsa04022.

Example <code><a rd-options="" href="/link/pathway_info?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway_info">pathway_info</a></code> object for <code><a rd-options="" href="/link/pathway?package=kangar00&version=1.4" data-mini-rdoc="kangar00::pathway">pathway</a></code> hsa04022.

hsa04022_info: Example `pathway_info` object for `pathway` hsa04022.

Description

Usage

Arguments

Format

Examples