TapestriExperiment-class

.TapestriExperiment

show,TapestriExperiment-method

TapestriExperiment Class Definition

Analysis of DNA copy number in single cells using
custom genome-wide targeted DNA sequencing panels for the Mission Bio
Tapestri platform. Users can easily parse, manipulate, and visualize
datasets produced from the automated 'Tapestri Pipeline', with support for
normalization, clustering, and copy number calling. Functions are also
available to deconvolute multiplexed samples by genotype and parsing
barcoded reads from exogenous lentiviral constructs.

Joseph Mays

karyotapR

DNA Copy Number Analysis for Genome-Wide Tapestri Panels

TapestriExperiment-class function

<dl><dt>object</dt>
<dd>An R object</dd>
<dt>TapestriExperiment</dt>
<dd>A <code>TapestriExperiment</code> object</dd></dl>

Arguments

<ul>
<li><code>show(TapestriExperiment)</code>: Show method for <code>TapestriExperiment</code></li>
</ul>

Methods (by generic)

<dl>
<dt><code>barcodeProbe</code></dt>
<dd>character.</dd></dl>
<dt><code>grnaProbe</code></dt>
<dd>character.</dd>
<dt><code>gmmParams</code></dt>
<dd>list.</dd>

Slots

TapestriExperiment Class Definition — TapestriExperiment-class

<dl>

<dt>object</dt>
<dd>An R object</dd>


<dt>TapestriExperiment</dt>
<dd>A <code>TapestriExperiment</code> object</dd>

</dl>

<dl>
<dt><code>barcodeProbe</code></dt>
<dd>character.</dd>


<dt><code>grnaProbe</code></dt>
<dd>character.</dd>


<dt><code>gmmParams</code></dt>
<dd>list.</dd>


</dl>

TapestriExperiment-class: TapestriExperiment Class Definition

Description

Usage

Value

Arguments

Methods (by generic)

Slots

Examples