dissmap

an ape::multiPhylo object. All trees must have
  identical tip names.

use branch length information in the
  calculation?

use.blen

unroot

Dissimilarity maps convert trees to vectors using
  tip-to-tip path lengths. Branch length information may be
  optionally discarded (the default), resulting in vectors
  based solely on tree topology.

Given a set of phylogenetic trees on a group of taxa (for
        example trees based on individual gene sequences), we present a
        method for identifying a subset of trees which are discordant
        with the other trees in the set. These discordant trees may
        arise from either biologically interesting phenomena
        (horizontal gene transfers, for example) or more mundane
        sequencing or annotation errors.

dissmap: dissimilarity map tree vectorization

Description

Usage

Arguments

Value